miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 214966 0.65 0.999918
Target:  5'- cGggGUccGGAUCCagaccGACGccgaccucgggauGCCCGUCGg -3'
miRNA:   3'- -CuuUAuaCUUAGGc----CUGC-------------UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 219668 0.67 0.999572
Target:  5'- --cGUcgGGAUCUGGGCGcgccGCCCGagGa -3'
miRNA:   3'- cuuUAuaCUUAGGCCUGC----UGGGCagC- -5'
8950 5' -49.1 NC_002512.2 + 166239 0.67 0.999469
Target:  5'- gGAAGUAcUGcGUCCaGGACGgcGCUCGUCa -3'
miRNA:   3'- -CUUUAU-ACuUAGG-CCUGC--UGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 218718 1.11 0.018335
Target:  5'- cGAAAUAUGAAUCCGGACGACCCGUCGa -3'
miRNA:   3'- -CUUUAUACUUAGGCCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 124877 0.66 0.999897
Target:  5'- ------aGAA-CCGGGCGGcggcCCCGUCa -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCU----GGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 207181 0.66 0.999897
Target:  5'- -uGAUGUGccgCCgGGGCGACgCGUUGg -3'
miRNA:   3'- cuUUAUACuuaGG-CCUGCUGgGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 131301 0.66 0.999867
Target:  5'- ----cGUGcagCgCGGACGACCCGcCGc -3'
miRNA:   3'- cuuuaUACuuaG-GCCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 148335 0.66 0.999784
Target:  5'- ----cGUGAAcCCGcACGACCCGUa- -3'
miRNA:   3'- cuuuaUACUUaGGCcUGCUGGGCAgc -5'
8950 5' -49.1 NC_002512.2 + 120131 0.66 0.999784
Target:  5'- ---cUAUGGAUCCaGAagaGACCCGagGa -3'
miRNA:   3'- cuuuAUACUUAGGcCUg--CUGGGCagC- -5'
8950 5' -49.1 NC_002512.2 + 160137 0.67 0.999572
Target:  5'- cGAGGUGgcGAUCCGGGCGccGCgUGUCa -3'
miRNA:   3'- -CUUUAUacUUAGGCCUGC--UGgGCAGc -5'
8950 5' -49.1 NC_002512.2 + 136375 0.67 0.999727
Target:  5'- -----cUGGAUCCGGAgGGCCgGcCa -3'
miRNA:   3'- cuuuauACUUAGGCCUgCUGGgCaGc -5'
8950 5' -49.1 NC_002512.2 + 102350 0.66 0.999784
Target:  5'- ------cGggUCCGGGCG-UCgGUCGu -3'
miRNA:   3'- cuuuauaCuuAGGCCUGCuGGgCAGC- -5'
8950 5' -49.1 NC_002512.2 + 224044 0.66 0.999897
Target:  5'- ------cGGGgccgCCggGGACGACUCGUCGg -3'
miRNA:   3'- cuuuauaCUUa---GG--CCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 124955 0.67 0.999727
Target:  5'- ------cGAcgCCGGACGAggaggCCGUCGc -3'
miRNA:   3'- cuuuauaCUuaGGCCUGCUg----GGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 205233 0.66 0.999897
Target:  5'- gGAGAUcgGGA--CGGACGACgUCGUCu -3'
miRNA:   3'- -CUUUAuaCUUagGCCUGCUG-GGCAGc -5'
8950 5' -49.1 NC_002512.2 + 164634 0.66 0.999784
Target:  5'- ------gGAGUCCGGACGGCaggcggCGaUCGg -3'
miRNA:   3'- cuuuauaCUUAGGCCUGCUGg-----GC-AGC- -5'
8950 5' -49.1 NC_002512.2 + 38107 0.67 0.999657
Target:  5'- gGGAAUcucUGccuGUCaCGGGCGAUCCGUCc -3'
miRNA:   3'- -CUUUAu--ACu--UAG-GCCUGCUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 180433 0.67 0.999572
Target:  5'- ----gGUGAcggcgccCCGGGCGgcGCCCGUCa -3'
miRNA:   3'- cuuuaUACUua-----GGCCUGC--UGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 153106 0.66 0.999897
Target:  5'- -----cUGGAUCCgGGACGAUUCGguggCGa -3'
miRNA:   3'- cuuuauACUUAGG-CCUGCUGGGCa---GC- -5'
8950 5' -49.1 NC_002512.2 + 194393 0.66 0.999867
Target:  5'- ------aGGAcuUCUGGACGGCCgaCGUCGu -3'
miRNA:   3'- cuuuauaCUU--AGGCCUGCUGG--GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.