miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 2244 0.66 0.999867
Target:  5'- ------cGGAcCCGGGCGcUCCGUCGc -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCuGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 3226 0.68 0.998817
Target:  5'- ------aGAGUCUGGAccCGGCgCGUCGg -3'
miRNA:   3'- cuuuauaCUUAGGCCU--GCUGgGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 5865 0.66 0.999826
Target:  5'- --cGUcgGAGUcCCGGGCGucguccgACUCGUCGc -3'
miRNA:   3'- cuuUAuaCUUA-GGCCUGC-------UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 6705 0.67 0.999346
Target:  5'- ----------gUCGGGCGGCCCGUCc -3'
miRNA:   3'- cuuuauacuuaGGCCUGCUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 7370 0.7 0.99384
Target:  5'- gGAAGUAcgaUGGAaacgcUCCGGACGACgaucgCGUCGa -3'
miRNA:   3'- -CUUUAU---ACUU-----AGGCCUGCUGg----GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 11030 0.73 0.967776
Target:  5'- ----gGUGcc-CCGGGCGACCuCGUCGg -3'
miRNA:   3'- cuuuaUACuuaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 11385 0.66 0.999768
Target:  5'- ------gGggUCCgacggcucggacgcGGACGACCCG-CGg -3'
miRNA:   3'- cuuuauaCuuAGG--------------CCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 14929 0.66 0.99983
Target:  5'- -----cUGGAUCCGGAC--CCCGUgCGu -3'
miRNA:   3'- cuuuauACUUAGGCCUGcuGGGCA-GC- -5'
8950 5' -49.1 NC_002512.2 + 16551 0.69 0.996062
Target:  5'- -----cUGGcUCCGGAUGuACUCGUCGg -3'
miRNA:   3'- cuuuauACUuAGGCCUGC-UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 18930 0.7 0.991866
Target:  5'- ------aGGGcCCGGACGACCuCGUUGg -3'
miRNA:   3'- cuuuauaCUUaGGCCUGCUGG-GCAGC- -5'
8950 5' -49.1 NC_002512.2 + 20306 0.67 0.999346
Target:  5'- ----gGUGAccgugCCGGACGaggaGCUCGUCGa -3'
miRNA:   3'- cuuuaUACUua---GGCCUGC----UGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 24834 0.66 0.999784
Target:  5'- -cAGUA--GGUCCGGgcccGCGGCCgGUCGg -3'
miRNA:   3'- cuUUAUacUUAGGCC----UGCUGGgCAGC- -5'
8950 5' -49.1 NC_002512.2 + 32499 0.68 0.998291
Target:  5'- uGGAGUcgGggUCCaGGGCGAucuCCCGg-- -3'
miRNA:   3'- -CUUUAuaCuuAGG-CCUGCU---GGGCagc -5'
8950 5' -49.1 NC_002512.2 + 35973 0.69 0.99714
Target:  5'- ------gGAGUCCGGgacGCGAUCCGcCGa -3'
miRNA:   3'- cuuuauaCUUAGGCC---UGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 36866 0.7 0.995409
Target:  5'- aGAGAUAuUGAAgaauuugcccguUUCGGACuGACUCGUCGu -3'
miRNA:   3'- -CUUUAU-ACUU------------AGGCCUG-CUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 38107 0.67 0.999657
Target:  5'- gGGAAUcucUGccuGUCaCGGGCGAUCCGUCc -3'
miRNA:   3'- -CUUUAu--ACu--UAG-GCCUGCUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 40933 0.71 0.990706
Target:  5'- -uGAUGUGuAUCgacuggCGGACGAUCUGUCGa -3'
miRNA:   3'- cuUUAUACuUAG------GCCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 46661 0.66 0.99983
Target:  5'- uGGAAg--GggUCCucgGGGuCGAuCCCGUCGa -3'
miRNA:   3'- -CUUUauaCuuAGG---CCU-GCU-GGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 49626 0.66 0.99983
Target:  5'- ----cAUGAggaucGUCCGGGCGAgCCGg-- -3'
miRNA:   3'- cuuuaUACU-----UAGGCCUGCUgGGCagc -5'
8950 5' -49.1 NC_002512.2 + 50693 0.67 0.999469
Target:  5'- ----cGUGAcgCUGGAcCGGCCCGagGa -3'
miRNA:   3'- cuuuaUACUuaGGCCU-GCUGGGCagC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.