miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 113894 0.69 0.963947
Target:  5'- gCCUCGUucaUCGUCcgggggACCUCGcgccgcaccUGGUAGAAg -3'
miRNA:   3'- -GGAGCA---AGCGG------UGGAGC---------ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 103227 0.66 0.994188
Target:  5'- gCUCGcgUCGCCGCC-CGUcgacggccgcGGcgAGGGCa -3'
miRNA:   3'- gGAGCa-AGCGGUGGaGCA----------CCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 8086 0.66 0.994188
Target:  5'- uCCUCGaacUCGUCGCCg---GcGUAGAGCa -3'
miRNA:   3'- -GGAGCa--AGCGGUGGagcaC-CAUCUUG- -5'
8951 3' -53 NC_002512.2 + 41385 0.66 0.994188
Target:  5'- gCUCGUagGaCACCUCGUugcgGGU-GAACg -3'
miRNA:   3'- gGAGCAagCgGUGGAGCA----CCAuCUUG- -5'
8951 3' -53 NC_002512.2 + 118275 0.66 0.992355
Target:  5'- gCCUCGcUgGCCGcCCUCGUccGGaGGAAg -3'
miRNA:   3'- -GGAGCaAgCGGU-GGAGCA--CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 125369 0.67 0.988775
Target:  5'- uCCUUGUUCuCCACCgCGUagcGGcccUGGAACa -3'
miRNA:   3'- -GGAGCAAGcGGUGGaGCA---CC---AUCUUG- -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 117741 0.67 0.985577
Target:  5'- gCUCGccgUCGaCCGCCUCGUcuucgcgccaugcGGgAGGGCg -3'
miRNA:   3'- gGAGCa--AGC-GGUGGAGCA-------------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 1685 0.67 0.982122
Target:  5'- gCCUCGacCGCgGCCUCGaaGUAGGu- -3'
miRNA:   3'- -GGAGCaaGCGgUGGAGCacCAUCUug -5'
8951 3' -53 NC_002512.2 + 62070 0.68 0.977849
Target:  5'- uCCUCG---GCCACCUCGUaGUugGGGGCc -3'
miRNA:   3'- -GGAGCaagCGGUGGAGCAcCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 119764 0.68 0.970093
Target:  5'- aUCUCGUUCugguCCggggUGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGcgguGGa---GCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 140838 0.79 0.531545
Target:  5'- uCCUCGUUCGCCACCgacgagauccUCGUGG-AGuucGCu -3'
miRNA:   3'- -GGAGCAAGCGGUGG----------AGCACCaUCu--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.