miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 2797 0.69 0.963947
Target:  5'- gCCUCGUUCGCCccACCU-GUGucuccaGUAGAc- -3'
miRNA:   3'- -GGAGCAAGCGG--UGGAgCAC------CAUCUug -5'
8951 3' -53 NC_002512.2 + 206536 0.71 0.920135
Target:  5'- aCCUCGUgcUCGCCGCaCUCGUacaccgccggcGGcccGGGGCg -3'
miRNA:   3'- -GGAGCA--AGCGGUG-GAGCA-----------CCa--UCUUG- -5'
8951 3' -53 NC_002512.2 + 216622 1.13 0.005345
Target:  5'- aCCUCGUUCGCCACCUCGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGCGGUGGAGCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 132145 0.68 0.977849
Target:  5'- --aCGacCGCCACCUCGaGGUcgguGAGCg -3'
miRNA:   3'- ggaGCaaGCGGUGGAGCaCCAu---CUUG- -5'
8951 3' -53 NC_002512.2 + 184433 0.67 0.982122
Target:  5'- gCCUCGgcCGCCGCCggCGUcGGacagGGAGu -3'
miRNA:   3'- -GGAGCaaGCGGUGGa-GCA-CCa---UCUUg -5'
8951 3' -53 NC_002512.2 + 19745 0.7 0.935663
Target:  5'- --aCGUUgGCCAgCCa-GUGGUAGAACu -3'
miRNA:   3'- ggaGCAAgCGGU-GGagCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 73951 0.66 0.994961
Target:  5'- uCCUCG-UCGCCGCUgcuccCGaagcUGG-AGGACg -3'
miRNA:   3'- -GGAGCaAGCGGUGGa----GC----ACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 103227 0.66 0.994188
Target:  5'- gCUCGcgUCGCCGCC-CGUcgacggccgcGGcgAGGGCa -3'
miRNA:   3'- gGAGCa-AGCGGUGGaGCA----------CCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 106348 0.7 0.935663
Target:  5'- gCUCGUcccgcgagcUCGCCACCUCGcggcccgucaGGUGuuGAACa -3'
miRNA:   3'- gGAGCA---------AGCGGUGGAGCa---------CCAU--CUUG- -5'
8951 3' -53 NC_002512.2 + 133625 0.69 0.956969
Target:  5'- gCUCGaUCGUCGCCUCGUcccuGGcGGAGu -3'
miRNA:   3'- gGAGCaAGCGGUGGAGCA----CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 127483 0.69 0.960565
Target:  5'- gUUCGUggcCGCCGcCCUCG-GGcgGGAGCa -3'
miRNA:   3'- gGAGCAa--GCGGU-GGAGCaCCa-UCUUG- -5'
8951 3' -53 NC_002512.2 + 25271 0.69 0.963947
Target:  5'- cCUUCGUcgUCGuCCuccuCCUCGcUGGUGGAGu -3'
miRNA:   3'- -GGAGCA--AGC-GGu---GGAGC-ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 78847 0.69 0.963947
Target:  5'- aCCgCGUgacgggcCGCCGCCUCGaGGUGGcuCg -3'
miRNA:   3'- -GGaGCAa------GCGGUGGAGCaCCAUCuuG- -5'
8951 3' -53 NC_002512.2 + 113894 0.69 0.963947
Target:  5'- gCCUCGUucaUCGUCcgggggACCUCGcgccgcaccUGGUAGAAg -3'
miRNA:   3'- -GGAGCA---AGCGG------UGGAGC---------ACCAUCUUg -5'
8951 3' -53 NC_002512.2 + 29684 0.67 0.987177
Target:  5'- uCCUCGggcUCGUCGCgCUCGUccgucucGGaGGAGCc -3'
miRNA:   3'- -GGAGCa--AGCGGUG-GAGCA-------CCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 139118 0.67 0.987329
Target:  5'- aCCUCGUUgGCCAagaagcgcuUCUCGgccgGGUcguucgccaAGGACu -3'
miRNA:   3'- -GGAGCAAgCGGU---------GGAGCa---CCA---------UCUUG- -5'
8951 3' -53 NC_002512.2 + 125369 0.67 0.988775
Target:  5'- uCCUUGUUCuCCACCgCGUagcGGcccUGGAACa -3'
miRNA:   3'- -GGAGCAAGcGGUGGaGCA---CC---AUCUUG- -5'
8951 3' -53 NC_002512.2 + 118275 0.66 0.992355
Target:  5'- gCCUCGcUgGCCGcCCUCGUccGGaGGAAg -3'
miRNA:   3'- -GGAGCaAgCGGU-GGAGCA--CCaUCUUg -5'
8951 3' -53 NC_002512.2 + 41385 0.66 0.994188
Target:  5'- gCUCGUagGaCACCUCGUugcgGGU-GAACg -3'
miRNA:   3'- gGAGCAagCgGUGGAGCA----CCAuCUUG- -5'
8951 3' -53 NC_002512.2 + 8086 0.66 0.994188
Target:  5'- uCCUCGaacUCGUCGCCg---GcGUAGAGCa -3'
miRNA:   3'- -GGAGCa--AGCGGUGGagcaC-CAUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.