miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 104293 0.66 0.768024
Target:  5'- gCGUCCgGCGGC--GGGaGGCUGC-Cg -3'
miRNA:   3'- aGCAGGgCGUCGugCCCgUCGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 10105 0.66 0.776928
Target:  5'- gUGUCCC-CGGC-CGGGCcGGCcGCGg -3'
miRNA:   3'- aGCAGGGcGUCGuGCCCG-UCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 86628 0.66 0.776928
Target:  5'- cUCGUCCuCGuCGGCGCGGuGUGGUggauCGCg -3'
miRNA:   3'- -AGCAGG-GC-GUCGUGCC-CGUCGac--GUG- -5'
8951 5' -61.3 NC_002512.2 + 70797 0.66 0.740691
Target:  5'- cUCGUCgCCGUugcgcaGGUugGGGgAGggGCGCg -3'
miRNA:   3'- -AGCAG-GGCG------UCGugCCCgUCgaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 10434 0.66 0.740691
Target:  5'- gUCGUCgCCGUcgGGCACGGG-GGC-GCGg -3'
miRNA:   3'- -AGCAG-GGCG--UCGUGCCCgUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 81361 0.66 0.768024
Target:  5'- ---cCUCGCGGCcgggGCGGGCGGCgGC-Cg -3'
miRNA:   3'- agcaGGGCGUCG----UGCCCGUCGaCGuG- -5'
8951 5' -61.3 NC_002512.2 + 8818 0.66 0.753555
Target:  5'- cCGUUCCGCcGCcggagcuugggccagACGGGCucGCUGC-Cg -3'
miRNA:   3'- aGCAGGGCGuCG---------------UGCCCGu-CGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 115305 0.66 0.768024
Target:  5'- aUCGUcCCCGUAGUACaGGCggaAGUUGUugaACa -3'
miRNA:   3'- -AGCA-GGGCGUCGUGcCCG---UCGACG---UG- -5'
8951 5' -61.3 NC_002512.2 + 44565 0.66 0.749898
Target:  5'- gCGgcgaCGCAG-ACGGGCAGCUccucGCGCc -3'
miRNA:   3'- aGCagg-GCGUCgUGCCCGUCGA----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 137973 0.66 0.767128
Target:  5'- aUGUCCUGCGuGC-CGGGCccgagcgGGCcgUGCGCc -3'
miRNA:   3'- aGCAGGGCGU-CGuGCCCG-------UCG--ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 89759 0.66 0.768024
Target:  5'- --uUCCCGCGgucggcGCGCGGGCAuCUGaCAUc -3'
miRNA:   3'- agcAGGGCGU------CGUGCCCGUcGAC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 18513 0.66 0.749898
Target:  5'- uUC-UUCCGCAGCAugccgcgcCGGGCGGUcaggccGCGCg -3'
miRNA:   3'- -AGcAGGGCGUCGU--------GCCCGUCGa-----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 111090 0.66 0.731398
Target:  5'- aUGUCCCGCA-UGCGGGU-GC-GCACc -3'
miRNA:   3'- aGCAGGGCGUcGUGCCCGuCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 49886 0.66 0.740691
Target:  5'- -aGUCCCGCugggGGaCACGGGCcacgcGCUGUc- -3'
miRNA:   3'- agCAGGGCG----UC-GUGCCCGu----CGACGug -5'
8951 5' -61.3 NC_002512.2 + 16822 0.66 0.768024
Target:  5'- aCGUagCCCGCGGgGCuGGGCAGg-GCGa -3'
miRNA:   3'- aGCA--GGGCGUCgUG-CCCGUCgaCGUg -5'
8951 5' -61.3 NC_002512.2 + 75613 0.66 0.749898
Target:  5'- gCGUCUgCGCAcGCgcacGCGGGCAcGC-GCACg -3'
miRNA:   3'- aGCAGG-GCGU-CG----UGCCCGU-CGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 98268 0.66 0.776928
Target:  5'- gCGUCuUCGUGGC-CGGGCGgGCcggGCGCu -3'
miRNA:   3'- aGCAG-GGCGUCGuGCCCGU-CGa--CGUG- -5'
8951 5' -61.3 NC_002512.2 + 16525 0.66 0.731398
Target:  5'- cUGUCgCCGcCAGCGCGGGCgucccccuGGCuccggaUGUACu -3'
miRNA:   3'- aGCAG-GGC-GUCGUGCCCG--------UCG------ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 37281 0.66 0.768024
Target:  5'- cCGUCgcccgCCGCGGCGCGccGCAGCaGCGg -3'
miRNA:   3'- aGCAG-----GGCGUCGUGCc-CGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 104832 0.66 0.736984
Target:  5'- aCGUCCCGUcccGGCugGaGCGGCggggagggaccucGCGCa -3'
miRNA:   3'- aGCAGGGCG---UCGugCcCGUCGa------------CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.