miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 2832 0.68 0.616044
Target:  5'- gCGggCCCGgAcGacgGCGGGCAGCUGCGg -3'
miRNA:   3'- aGCa-GGGCgU-Cg--UGCCCGUCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 5089 0.69 0.558176
Target:  5'- gUCGUCgCCGgcguCGGCGCGGGCGGgaGagACa -3'
miRNA:   3'- -AGCAG-GGC----GUCGUGCCCGUCgaCg-UG- -5'
8951 5' -61.3 NC_002512.2 + 5296 0.67 0.702133
Target:  5'- gCGUCCCGCGcccugacGUAaccCGGGUAGCcGCGg -3'
miRNA:   3'- aGCAGGGCGU-------CGU---GCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 6591 0.72 0.422746
Target:  5'- gUCGaCCgGCGGCACcauGUAGCUGCGCg -3'
miRNA:   3'- -AGCaGGgCGUCGUGcc-CGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 7357 0.67 0.683928
Target:  5'- cCGgCCCaccgcgacgGCGGCcgcgGCGGGCGGCcagGCGCa -3'
miRNA:   3'- aGCaGGG---------CGUCG----UGCCCGUCGa--CGUG- -5'
8951 5' -61.3 NC_002512.2 + 8818 0.66 0.753555
Target:  5'- cCGUUCCGCcGCcggagcuugggccagACGGGCucGCUGC-Cg -3'
miRNA:   3'- aGCAGGGCGuCG---------------UGCCCGu-CGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 9208 0.67 0.674287
Target:  5'- cCGUCCCGUcgcccAGCACGacGCGGCgggccaggugGCGCu -3'
miRNA:   3'- aGCAGGGCG-----UCGUGCc-CGUCGa---------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 10105 0.66 0.776928
Target:  5'- gUGUCCC-CGGC-CGGGCcGGCcGCGg -3'
miRNA:   3'- aGCAGGGcGUCGuGCCCG-UCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 10434 0.66 0.740691
Target:  5'- gUCGUCgCCGUcgGGCACGGG-GGC-GCGg -3'
miRNA:   3'- -AGCAG-GGCG--UCGUGCCCgUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 13620 0.71 0.474764
Target:  5'- cCGagCUgGCGGUGCGGGCGGC-GCACc -3'
miRNA:   3'- aGCa-GGgCGUCGUGCCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 14996 0.69 0.596645
Target:  5'- -aGUCCCGCAGCuugucCGGGCugagGCAg -3'
miRNA:   3'- agCAGGGCGUCGu----GCCCGucgaCGUg -5'
8951 5' -61.3 NC_002512.2 + 15678 0.72 0.414412
Target:  5'- aCGUCCCGgGGCAgCGGGC-GCaGCGg -3'
miRNA:   3'- aGCAGGGCgUCGU-GCCCGuCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 16525 0.66 0.731398
Target:  5'- cUGUCgCCGcCAGCGCGGGCgucccccuGGCuccggaUGUACu -3'
miRNA:   3'- aGCAG-GGC-GUCGUGCCCG--------UCG------ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 16822 0.66 0.768024
Target:  5'- aCGUagCCCGCGGgGCuGGGCAGg-GCGa -3'
miRNA:   3'- aGCA--GGGCGUCgUG-CCCGUCgaCGUg -5'
8951 5' -61.3 NC_002512.2 + 18131 0.71 0.44574
Target:  5'- gUCcUCCCGCAGCgcccgggccgcgucGCGGGCcaGGCcgagGCACa -3'
miRNA:   3'- -AGcAGGGCGUCG--------------UGCCCG--UCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 18513 0.66 0.749898
Target:  5'- uUC-UUCCGCAGCAugccgcgcCGGGCGGUcaggccGCGCg -3'
miRNA:   3'- -AGcAGGGCGUCGU--------GCCCGUCGa-----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 19196 0.67 0.722028
Target:  5'- aUC-UCCCGCGGCGCcuuGCcGUUGCGCu -3'
miRNA:   3'- -AGcAGGGCGUCGUGcc-CGuCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 22117 0.69 0.57734
Target:  5'- cCGUCCCGCAaccacCACGgcGGCGGCUcCACc -3'
miRNA:   3'- aGCAGGGCGUc----GUGC--CCGUCGAcGUG- -5'
8951 5' -61.3 NC_002512.2 + 22710 0.75 0.285426
Target:  5'- gUCGcCCCgGCGGCacaucaacagcuaccGCGGGCGGCUGCu- -3'
miRNA:   3'- -AGCaGGG-CGUCG---------------UGCCCGUCGACGug -5'
8951 5' -61.3 NC_002512.2 + 22971 0.68 0.645208
Target:  5'- cCGUucaucaCCCGCGGCgggacGCGGGCGGC-GCu- -3'
miRNA:   3'- aGCA------GGGCGUCG-----UGCCCGUCGaCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.