miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 228063 0.73 0.374303
Target:  5'- aCGg-CUGCGGCGCGGGagacgacgGGCUGCACa -3'
miRNA:   3'- aGCagGGCGUCGUGCCCg-------UCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 227604 0.72 0.40618
Target:  5'- ---aCCCGCAGCggccggaggGCGGGCGGCgGCGg -3'
miRNA:   3'- agcaGGGCGUCG---------UGCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 225078 0.69 0.605366
Target:  5'- aCGUCCCGCAGCagcugccgcaGCaaccgucgcaaccGGcGCAGCUcgagGCGCa -3'
miRNA:   3'- aGCAGGGCGUCG----------UG-------------CC-CGUCGA----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 223213 0.71 0.474764
Target:  5'- gCGUCCCGgAGCGCGucccGGCcGGCucggUGCACu -3'
miRNA:   3'- aGCAGGGCgUCGUGC----CCG-UCG----ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 219045 0.66 0.731398
Target:  5'- gUCGUCggCCGCGGCGCGGG--GCUcccCGCg -3'
miRNA:   3'- -AGCAG--GGCGUCGUGCCCguCGAc--GUG- -5'
8951 5' -61.3 NC_002512.2 + 217328 0.66 0.731398
Target:  5'- gCGU-CUGCAGCACGuacGGCGGCaucgggacGCACg -3'
miRNA:   3'- aGCAgGGCGUCGUGC---CCGUCGa-------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 217124 0.73 0.358259
Target:  5'- -aGUCCUGCGGCggcagcaGCGGGCccAGCuUGCGCc -3'
miRNA:   3'- agCAGGGCGUCG-------UGCCCG--UCG-ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 217086 0.67 0.703086
Target:  5'- cCG-CCCGagcauccGCAgGGGCAGCggggGCGCc -3'
miRNA:   3'- aGCaGGGCgu-----CGUgCCCGUCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 216804 0.66 0.749898
Target:  5'- gUCGUUgacgauggcgUCGCGGguCGGGUacGGCUGCGu -3'
miRNA:   3'- -AGCAG----------GGCGUCguGCCCG--UCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 216657 1.1 0.001192
Target:  5'- gUCGUCCCGCAGCACGGGCAGCUGCACg -3'
miRNA:   3'- -AGCAGGGCGUCGUGCCCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 216479 0.67 0.701179
Target:  5'- gCGUCCCacagggaggcGCAGCGCGucaGGUAGCggacgaaccgcgGCACc -3'
miRNA:   3'- aGCAGGG----------CGUCGUGC---CCGUCGa-----------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 215743 0.69 0.606336
Target:  5'- uUCGUCCCGCuGCccaaGGGCuguuucuccagcGGCaGCGCc -3'
miRNA:   3'- -AGCAGGGCGuCGug--CCCG------------UCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 215172 0.69 0.567737
Target:  5'- cCGUCCUGCuGCuCGGGgAGCgGaCGCg -3'
miRNA:   3'- aGCAGGGCGuCGuGCCCgUCGaC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 212994 0.67 0.681039
Target:  5'- aUCGUCgCCGCGGCcguCGGGCccggggcccucucgAGgUGCGu -3'
miRNA:   3'- -AGCAG-GGCGUCGu--GCCCG--------------UCgACGUg -5'
8951 5' -61.3 NC_002512.2 + 211737 0.67 0.703086
Target:  5'- cUCGgccuggCCCGCgacgcGGCcCGGGC-GCUGCGg -3'
miRNA:   3'- -AGCa-----GGGCG-----UCGuGCCCGuCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 209556 0.68 0.664615
Target:  5'- aUCGUCUCGgAGCGCGGucucgaCGGCUccucguccgGCACg -3'
miRNA:   3'- -AGCAGGGCgUCGUGCCc-----GUCGA---------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 209016 0.68 0.635487
Target:  5'- gUCGUCgCCGCcaugAGCG-GGGCGGCcGCGu -3'
miRNA:   3'- -AGCAG-GGCG----UCGUgCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 206914 0.71 0.447471
Target:  5'- gCGUCCCGC--CGCGGGUgaugaacGGCUGgCACa -3'
miRNA:   3'- aGCAGGGCGucGUGCCCG-------UCGAC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 206181 0.73 0.382112
Target:  5'- cUCGUCCUGgGGCACGGacaccaggaaGCAGCgGCGg -3'
miRNA:   3'- -AGCAGGGCgUCGUGCC----------CGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 205693 0.68 0.616044
Target:  5'- cCGUCCUGUcgaacgacaccGGCgACaGGCGGCgGCACa -3'
miRNA:   3'- aGCAGGGCG-----------UCG-UGcCCGUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.