miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 216657 1.1 0.001192
Target:  5'- gUCGUCCCGCAGCACGGGCAGCUGCACg -3'
miRNA:   3'- -AGCAGGGCGUCGUGCCCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 58058 0.8 0.133006
Target:  5'- cCGUCCCGCGGUAccggaugcCGGGCAGCaggaGCGCg -3'
miRNA:   3'- aGCAGGGCGUCGU--------GCCCGUCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 107912 0.78 0.169647
Target:  5'- cUCGUCCCGcCGGCGggcggggaccCGGGuCAGCUGCAg -3'
miRNA:   3'- -AGCAGGGC-GUCGU----------GCCC-GUCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 135180 0.78 0.172524
Target:  5'- gCGcCCCGCGcaccgcgagcugucGCACgaGGGCAGCUGCGCg -3'
miRNA:   3'- aGCaGGGCGU--------------CGUG--CCCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 123136 0.77 0.215061
Target:  5'- cCGUCCCGgGGgACgGGGCGGCgGCGCc -3'
miRNA:   3'- aGCAGGGCgUCgUG-CCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 93345 0.75 0.276648
Target:  5'- -gGUCCUGCAGCAUGGcCAGCgUGCAg -3'
miRNA:   3'- agCAGGGCGUCGUGCCcGUCG-ACGUg -5'
8951 5' -61.3 NC_002512.2 + 91878 0.75 0.276648
Target:  5'- cCGUCC---GGCGCGGGCGGCgGCGCg -3'
miRNA:   3'- aGCAGGgcgUCGUGCCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 110761 0.75 0.282896
Target:  5'- gCGUCCCgGUAGCGCaccuccGCAGCUGCGCc -3'
miRNA:   3'- aGCAGGG-CGUCGUGcc----CGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 22710 0.75 0.285426
Target:  5'- gUCGcCCCgGCGGCacaucaacagcuaccGCGGGCGGCUGCu- -3'
miRNA:   3'- -AGCaGGG-CGUCG---------------UGCCCGUCGACGug -5'
8951 5' -61.3 NC_002512.2 + 136826 0.74 0.336907
Target:  5'- cUCGUCCCGguaCAGCGCcugGGGCAGCaGC-Cg -3'
miRNA:   3'- -AGCAGGGC---GUCGUG---CCCGUCGaCGuG- -5'
8951 5' -61.3 NC_002512.2 + 171799 0.73 0.344164
Target:  5'- cUCGUCCCGaCGGCGCGcGCuccuGCUGCcCg -3'
miRNA:   3'- -AGCAGGGC-GUCGUGCcCGu---CGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 95067 0.73 0.344164
Target:  5'- cCGUCggcaGCAGCugGGGCAGCaGCGa -3'
miRNA:   3'- aGCAGgg--CGUCGugCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 93004 0.73 0.344164
Target:  5'- cCGUCUCgGUGGCggACGGGCAGCUGUg- -3'
miRNA:   3'- aGCAGGG-CGUCG--UGCCCGUCGACGug -5'
8951 5' -61.3 NC_002512.2 + 46409 0.73 0.351532
Target:  5'- gCGgCCCGCAGCACGgccuuGGUGGCgGCGCc -3'
miRNA:   3'- aGCaGGGCGUCGUGC-----CCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 153972 0.73 0.351532
Target:  5'- -gGUCCgGCGGCGCcGGCGGCgGCAa -3'
miRNA:   3'- agCAGGgCGUCGUGcCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 96823 0.73 0.356007
Target:  5'- cCG-CCUGCAGUACcugcaggggcucaGGCAGCUGCGCg -3'
miRNA:   3'- aGCaGGGCGUCGUGc------------CCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 217124 0.73 0.358259
Target:  5'- -aGUCCUGCGGCggcagcaGCGGGCccAGCuUGCGCc -3'
miRNA:   3'- agCAGGGCGUCG-------UGCCCG--UCG-ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 228063 0.73 0.374303
Target:  5'- aCGg-CUGCGGCGCGGGagacgacgGGCUGCACa -3'
miRNA:   3'- aGCagGGCGUCGUGCCCg-------UCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 152800 0.73 0.382112
Target:  5'- cUCGgaggUCCGCGGCgacgGCGGGCGGCgaGCAg -3'
miRNA:   3'- -AGCa---GGGCGUCG----UGCCCGUCGa-CGUg -5'
8951 5' -61.3 NC_002512.2 + 206181 0.73 0.382112
Target:  5'- cUCGUCCUGgGGCACGGacaccaggaaGCAGCgGCGg -3'
miRNA:   3'- -AGCAGGGCgUCGUGCC----------CGUCGaCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.