miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 192787 0.72 0.403731
Target:  5'- cCGUCgUGCGGCGCGGGCacaacgccacccggGGCgaucGCACc -3'
miRNA:   3'- aGCAGgGCGUCGUGCCCG--------------UCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 31651 0.72 0.40618
Target:  5'- cCGUCCCGgaCGGCGCGGGC-GCgGC-Cg -3'
miRNA:   3'- aGCAGGGC--GUCGUGCCCGuCGaCGuG- -5'
8951 5' -61.3 NC_002512.2 + 227604 0.72 0.40618
Target:  5'- ---aCCCGCAGCggccggaggGCGGGCGGCgGCGg -3'
miRNA:   3'- agcaGGGCGUCG---------UGCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 15678 0.72 0.414412
Target:  5'- aCGUCCCGgGGCAgCGGGC-GCaGCGg -3'
miRNA:   3'- aGCAGGGCgUCGU-GCCCGuCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 6591 0.72 0.422746
Target:  5'- gUCGaCCgGCGGCACcauGUAGCUGCGCg -3'
miRNA:   3'- -AGCaGGgCGUCGUGcc-CGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 101039 0.72 0.43118
Target:  5'- -gGcCCgCGCGGCgcccgaGCGGuGCAGCUGCGCc -3'
miRNA:   3'- agCaGG-GCGUCG------UGCC-CGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 84684 0.71 0.439711
Target:  5'- cUCGUCCCGCAGCcCGGG--GUcgaacuccgUGCGCg -3'
miRNA:   3'- -AGCAGGGCGUCGuGCCCguCG---------ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 18131 0.71 0.44574
Target:  5'- gUCcUCCCGCAGCgcccgggccgcgucGCGGGCcaGGCcgagGCACa -3'
miRNA:   3'- -AGcAGGGCGUCG--------------UGCCCG--UCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 206914 0.71 0.447471
Target:  5'- gCGUCCCGC--CGCGGGUgaugaacGGCUGgCACa -3'
miRNA:   3'- aGCAGGGCGucGUGCCCG-------UCGAC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 54249 0.71 0.448337
Target:  5'- aCGUCCgcaGCGGCA-GGGCGGCgGCGu -3'
miRNA:   3'- aGCAGGg--CGUCGUgCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 45521 0.71 0.448337
Target:  5'- gCG-CCCGCGGCGgGcGGCGGCgGCGa -3'
miRNA:   3'- aGCaGGGCGUCGUgC-CCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 24917 0.71 0.457057
Target:  5'- gUCG-CCCGCGGCGuCGGGCucGGCccGCAg -3'
miRNA:   3'- -AGCaGGGCGUCGU-GCCCG--UCGa-CGUg -5'
8951 5' -61.3 NC_002512.2 + 223213 0.71 0.474764
Target:  5'- gCGUCCCGgAGCGCGucccGGCcGGCucggUGCACu -3'
miRNA:   3'- aGCAGGGCgUCGUGC----CCG-UCG----ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 83966 0.71 0.474764
Target:  5'- -aGUCCCGgcggcggaugccCGGCGCgGGGCGGUcGCGCa -3'
miRNA:   3'- agCAGGGC------------GUCGUG-CCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 119181 0.71 0.474764
Target:  5'- aCG-CCaUGCAGCugGcccuggcccugcGGCGGCUGCGCg -3'
miRNA:   3'- aGCaGG-GCGUCGugC------------CCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 13620 0.71 0.474764
Target:  5'- cCGagCUgGCGGUGCGGGCGGC-GCACc -3'
miRNA:   3'- aGCa-GGgCGUCGUGCCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 43082 0.71 0.474764
Target:  5'- -gGUCCCGgGGCGCGGcgaGCAGCggGgACg -3'
miRNA:   3'- agCAGGGCgUCGUGCC---CGUCGa-CgUG- -5'
8951 5' -61.3 NC_002512.2 + 165472 0.71 0.483745
Target:  5'- aUCGgaagaUCCCG-AGUuuCGGGUGGCUGCGCg -3'
miRNA:   3'- -AGC-----AGGGCgUCGu-GCCCGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 131728 0.71 0.483745
Target:  5'- cCGUCCagaCGCGGCgaccgccgggGCGGGCGGCcGCGa -3'
miRNA:   3'- aGCAGG---GCGUCG----------UGCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 46561 0.7 0.491897
Target:  5'- -gGUCUCGCGGCugaagaaGCGGGCGGUgaugGCGg -3'
miRNA:   3'- agCAGGGCGUCG-------UGCCCGUCGa---CGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.