miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 24917 0.71 0.457057
Target:  5'- gUCG-CCCGCGGCGuCGGGCucGGCccGCAg -3'
miRNA:   3'- -AGCaGGGCGUCGU-GCCCG--UCGa-CGUg -5'
8951 5' -61.3 NC_002512.2 + 29902 0.68 0.663647
Target:  5'- cUCGUcCCCGCcgGGCGCGcggacgcGGCGGgaGUGCa -3'
miRNA:   3'- -AGCA-GGGCG--UCGUGC-------CCGUCgaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 31651 0.72 0.40618
Target:  5'- cCGUCCCGgaCGGCGCGGGC-GCgGC-Cg -3'
miRNA:   3'- aGCAGGGC--GUCGUGCCCGuCGaCGuG- -5'
8951 5' -61.3 NC_002512.2 + 37281 0.66 0.768024
Target:  5'- cCGUCgcccgCCGCGGCGCGccGCAGCaGCGg -3'
miRNA:   3'- aGCAG-----GGCGUCGUGCc-CGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 43082 0.71 0.474764
Target:  5'- -gGUCCCGgGGCGCGGcgaGCAGCggGgACg -3'
miRNA:   3'- agCAGGGCgUCGUGCC---CGUCGa-CgUG- -5'
8951 5' -61.3 NC_002512.2 + 44244 0.7 0.52044
Target:  5'- aCGUCCCccaGgAGguCGGaCAGCUGCACc -3'
miRNA:   3'- aGCAGGG---CgUCguGCCcGUCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 44565 0.66 0.749898
Target:  5'- gCGgcgaCGCAG-ACGGGCAGCUccucGCGCc -3'
miRNA:   3'- aGCagg-GCGUCgUGCCCGUCGA----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 45521 0.71 0.448337
Target:  5'- gCG-CCCGCGGCGgGcGGCGGCgGCGa -3'
miRNA:   3'- aGCaGGGCGUCGUgC-CCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 46409 0.73 0.351532
Target:  5'- gCGgCCCGCAGCACGgccuuGGUGGCgGCGCc -3'
miRNA:   3'- aGCaGGGCGUCGUGC-----CCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 46561 0.7 0.491897
Target:  5'- -gGUCUCGCGGCugaagaaGCGGGCGGUgaugGCGg -3'
miRNA:   3'- agCAGGGCGUCG-------UGCCCGUCGa---CGUg -5'
8951 5' -61.3 NC_002512.2 + 49886 0.66 0.740691
Target:  5'- -aGUCCCGCugggGGaCACGGGCcacgcGCUGUc- -3'
miRNA:   3'- agCAGGGCG----UC-GUGCCCGu----CGACGug -5'
8951 5' -61.3 NC_002512.2 + 54249 0.71 0.448337
Target:  5'- aCGUCCgcaGCGGCA-GGGCGGCgGCGu -3'
miRNA:   3'- aGCAGGg--CGUCGUgCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 58058 0.8 0.133006
Target:  5'- cCGUCCCGCGGUAccggaugcCGGGCAGCaggaGCGCg -3'
miRNA:   3'- aGCAGGGCGUCGU--------GCCCGUCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 59461 0.67 0.712587
Target:  5'- gCGggaCCCGCAGCAgaaGuGGCuGCUGgACu -3'
miRNA:   3'- aGCa--GGGCGUCGUg--C-CCGuCGACgUG- -5'
8951 5' -61.3 NC_002512.2 + 61962 0.7 0.52044
Target:  5'- aUGUCCuUGgGGaaaACGGGCAGgaGCACg -3'
miRNA:   3'- aGCAGG-GCgUCg--UGCCCGUCgaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 65410 0.67 0.674287
Target:  5'- -aGUCCuCGUAGCucgGCGGGCGGUcGuCGCc -3'
miRNA:   3'- agCAGG-GCGUCG---UGCCCGUCGaC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 70797 0.66 0.740691
Target:  5'- cUCGUCgCCGUugcgcaGGUugGGGgAGggGCGCg -3'
miRNA:   3'- -AGCAG-GGCG------UCGugCCCgUCgaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 75613 0.66 0.749898
Target:  5'- gCGUCUgCGCAcGCgcacGCGGGCAcGC-GCACg -3'
miRNA:   3'- aGCAGG-GCGU-CG----UGCCCGU-CGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 77656 0.66 0.768024
Target:  5'- aCGUUCCGCAG-ACGGGuCGGCagGUu- -3'
miRNA:   3'- aGCAGGGCGUCgUGCCC-GUCGa-CGug -5'
8951 5' -61.3 NC_002512.2 + 79222 0.69 0.586977
Target:  5'- gCG-CCCGCGGaccuCGaGGCucgAGCUGCGCa -3'
miRNA:   3'- aGCaGGGCGUCgu--GC-CCG---UCGACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.