miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 152712 0.71 0.404879
Target:  5'- --gGUCGGgGUGCGGCGGGCaGGgGAc -3'
miRNA:   3'- uugCGGUCgUACGCCGCCCGgUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 186990 0.71 0.404879
Target:  5'- uGCGCaugGGCuacGCGGCGGGCCuguacGCGGg -3'
miRNA:   3'- uUGCGg--UCGua-CGCCGCCCGGu----CGCU- -5'
8952 5' -62.8 NC_002512.2 + 198154 0.71 0.404879
Target:  5'- cGCGCgGGCcgGguCGGCGccGGCCGGCGGa -3'
miRNA:   3'- uUGCGgUCGuaC--GCCGC--CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 156460 0.71 0.404879
Target:  5'- gGGCGgCGGgGgacucggggGCGGCGGGCuCGGCGGg -3'
miRNA:   3'- -UUGCgGUCgUa--------CGCCGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 122794 0.7 0.413072
Target:  5'- gGGCGCCgGGCccugGCGGCGGGuccccuacguCCAGCGc -3'
miRNA:   3'- -UUGCGG-UCGua--CGCCGCCC----------GGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 218215 0.7 0.421366
Target:  5'- -cCGCCucgGGCc-GCGGCGGGCC-GCGGc -3'
miRNA:   3'- uuGCGG---UCGuaCGCCGCCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 95310 0.7 0.421366
Target:  5'- aGGCGCCgaAGCA-GCGGCGGGCgaaguccccgauCAGCu- -3'
miRNA:   3'- -UUGCGG--UCGUaCGCCGCCCG------------GUCGcu -5'
8952 5' -62.8 NC_002512.2 + 195596 0.7 0.42976
Target:  5'- gAACGCCAGuCAcuCGGCGGGgCGGCc- -3'
miRNA:   3'- -UUGCGGUC-GUacGCCGCCCgGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 102528 0.7 0.42976
Target:  5'- gGAgGCCAGgGcGaCGGCGGGUCAGCu- -3'
miRNA:   3'- -UUgCGGUCgUaC-GCCGCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 221398 0.7 0.42976
Target:  5'- gGGCGCgGGCGgggagGCGGCGGGUCugucCGAc -3'
miRNA:   3'- -UUGCGgUCGUa----CGCCGCCCGGuc--GCU- -5'
8952 5' -62.8 NC_002512.2 + 160826 0.7 0.438251
Target:  5'- cGGCaCCAGCAgGCGG-GcGGCCGGCGGc -3'
miRNA:   3'- -UUGcGGUCGUaCGCCgC-CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 71579 0.7 0.438251
Target:  5'- cGCGCCGGaCGaccGCGGCcuuggGGGCCGGCa- -3'
miRNA:   3'- uUGCGGUC-GUa--CGCCG-----CCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 184868 0.7 0.438251
Target:  5'- -cCGUCAGCGUGCGcuGCuacugccacgGGGUCAGCGGg -3'
miRNA:   3'- uuGCGGUCGUACGC--CG----------CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 81274 0.7 0.438251
Target:  5'- cGACGUaCGGCAgggggGCGGUccGGGCCuGCGGg -3'
miRNA:   3'- -UUGCG-GUCGUa----CGCCG--CCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 75272 0.7 0.446838
Target:  5'- cGAUGgCGGCGacgGCGGCGGcGgCGGCGAc -3'
miRNA:   3'- -UUGCgGUCGUa--CGCCGCC-CgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 26654 0.7 0.446838
Target:  5'- cAGCGCacgaGGUcgGgGGCGGGCUcgaAGCGGc -3'
miRNA:   3'- -UUGCGg---UCGuaCgCCGCCCGG---UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 169007 0.7 0.446838
Target:  5'- cGCGCCGGCucgGCGaucCGGGCgGGCGu -3'
miRNA:   3'- uUGCGGUCGua-CGCc--GCCCGgUCGCu -5'
8952 5' -62.8 NC_002512.2 + 81934 0.7 0.446838
Target:  5'- cGACGaCGGCGaggGCGGagGGGCCGGCGc -3'
miRNA:   3'- -UUGCgGUCGUa--CGCCg-CCCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 229539 0.7 0.446838
Target:  5'- gAACGCCGGgGaGCcgGGCGGggcGCCGGCGGa -3'
miRNA:   3'- -UUGCGGUCgUaCG--CCGCC---CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 142004 0.7 0.453774
Target:  5'- gGGCGauCCGGCGgccgucucuuccGCGGCcggGGGCCGGCGAc -3'
miRNA:   3'- -UUGC--GGUCGUa-----------CGCCG---CCCGGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.