miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 157085 0.73 0.301508
Target:  5'- -uCGCCGGCGcccaCGGCGGGCCcgucccGGCGAc -3'
miRNA:   3'- uuGCGGUCGUac--GCCGCCCGG------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 188646 0.73 0.30616
Target:  5'- gGGCGCCGGCG-GCGGCGGcgGCCcgucguccgaccgcGGCGGu -3'
miRNA:   3'- -UUGCGGUCGUaCGCCGCC--CGG--------------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 45511 0.73 0.308171
Target:  5'- cACGCCGaaagcGCccGCGGCGGGCggCGGCGGc -3'
miRNA:   3'- uUGCGGU-----CGuaCGCCGCCCG--GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 96529 0.73 0.308171
Target:  5'- cGCGCCGGCgGUGUGaGCcgGGGCCGGgGAu -3'
miRNA:   3'- uUGCGGUCG-UACGC-CG--CCCGGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 227304 0.72 0.314945
Target:  5'- gAGCGCCAGCAUGgGGgagaCGcGCCGGCGc -3'
miRNA:   3'- -UUGCGGUCGUACgCC----GCcCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 74188 0.72 0.321832
Target:  5'- aGGCGCCGGCAcaggGCGGCgacguccguGGGCUcGCGGu -3'
miRNA:   3'- -UUGCGGUCGUa---CGCCG---------CCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 54237 0.72 0.328125
Target:  5'- aGACGCacucgcacguccgCAGCGgcaggGCGGCGGcGUCGGCGAc -3'
miRNA:   3'- -UUGCG-------------GUCGUa----CGCCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 130150 0.72 0.33594
Target:  5'- --gGCCgcggGGCccgGCGGCGGGCCGGCc- -3'
miRNA:   3'- uugCGG----UCGua-CGCCGCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 83815 0.72 0.343162
Target:  5'- cGCGCCGGCGgcgGCGGCuccGGGCCcgggucgucgcaGGCGc -3'
miRNA:   3'- uUGCGGUCGUa--CGCCG---CCCGG------------UCGCu -5'
8952 5' -62.8 NC_002512.2 + 222404 0.72 0.350495
Target:  5'- gAGCGCCgcGGCuucgGCGG-GGGCCGGCa- -3'
miRNA:   3'- -UUGCGG--UCGua--CGCCgCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 82336 0.72 0.350495
Target:  5'- -cCGCCccGGCGgguaGCGGUGGGCguGCGGg -3'
miRNA:   3'- uuGCGG--UCGUa---CGCCGCCCGguCGCU- -5'
8952 5' -62.8 NC_002512.2 + 147694 0.71 0.357938
Target:  5'- gGACGCCGGCcgacgGCGGaCGGGCUcuCGAc -3'
miRNA:   3'- -UUGCGGUCGua---CGCC-GCCCGGucGCU- -5'
8952 5' -62.8 NC_002512.2 + 42702 0.71 0.364732
Target:  5'- cGGCGCCGGCAcGCcgaagauGGCGGGCCA-CGu -3'
miRNA:   3'- -UUGCGGUCGUaCG-------CCGCCCGGUcGCu -5'
8952 5' -62.8 NC_002512.2 + 17516 0.71 0.365492
Target:  5'- cGACGUCGGCGU-CGGCGuaggcGGCCAGCu- -3'
miRNA:   3'- -UUGCGGUCGUAcGCCGC-----CCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 111175 0.71 0.373155
Target:  5'- -uCGCCGGCGaGCGGCaGGCgGGgGAa -3'
miRNA:   3'- uuGCGGUCGUaCGCCGcCCGgUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 107918 0.71 0.373155
Target:  5'- -cCGCCGGCggGCGGggaccCGGGUCAGCu- -3'
miRNA:   3'- uuGCGGUCGuaCGCC-----GCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 3058 0.71 0.380926
Target:  5'- uGACGgCGGCGgacGCGGCGGcGgCGGCGGc -3'
miRNA:   3'- -UUGCgGUCGUa--CGCCGCC-CgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 212148 0.71 0.380926
Target:  5'- uGCGUCGGCGggcacugGCGGCGGGaCGGCu- -3'
miRNA:   3'- uUGCGGUCGUa------CGCCGCCCgGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 117699 0.71 0.380926
Target:  5'- uGCGUgGcGCAccUGCGGCGGGUgcgCAGCGAc -3'
miRNA:   3'- uUGCGgU-CGU--ACGCCGCCCG---GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 217780 0.71 0.39679
Target:  5'- -uCGCCGGgGUcGCGGCcGGCUGGCGGa -3'
miRNA:   3'- uuGCGGUCgUA-CGCCGcCCGGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.