miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 18140 0.66 0.662324
Target:  5'- cAGCGCCcgGGCc-GCGucGCGGGCCAGgcCGAg -3'
miRNA:   3'- -UUGCGG--UCGuaCGC--CGCCCGGUC--GCU- -5'
8952 5' -62.8 NC_002512.2 + 21148 0.66 0.661357
Target:  5'- gGGCGacugccuCCGGUcgGCGGCGcucccgaucuGGUCGGCGAg -3'
miRNA:   3'- -UUGC-------GGUCGuaCGCCGC----------CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 21479 0.69 0.482085
Target:  5'- cGGCGCCcguagAGCAUccGCaGGCGGGCCucgcAGCGu -3'
miRNA:   3'- -UUGCGG-----UCGUA--CG-CCGCCCGG----UCGCu -5'
8952 5' -62.8 NC_002512.2 + 22942 0.66 0.652651
Target:  5'- -uCGCUgaagGGCAcGCGGCGGuguGCCAGCc- -3'
miRNA:   3'- uuGCGG----UCGUaCGCCGCC---CGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 24281 0.66 0.666188
Target:  5'- cGGCGaCGGCAUcccgcgggacaGCGGCGGGgcgaacugcggucccCCGGCGGu -3'
miRNA:   3'- -UUGCgGUCGUA-----------CGCCGCCC---------------GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 24831 0.66 0.681597
Target:  5'- --aGCCAGUAgguccgggcccGCGGCcGGUCGGCGGc -3'
miRNA:   3'- uugCGGUCGUa----------CGCCGcCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 25937 0.66 0.671011
Target:  5'- uGCGUCGGCcgGgGGCcacgaGGGCCucguaguAGCGGa -3'
miRNA:   3'- uUGCGGUCGuaCgCCG-----CCCGG-------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 26654 0.7 0.446838
Target:  5'- cAGCGCacgaGGUcgGgGGCGGGCUcgaAGCGGc -3'
miRNA:   3'- -UUGCGg---UCGuaCgCCGCCCGG---UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 29952 0.68 0.537303
Target:  5'- gGACaGCCGGUGaGCGGCGgccGGCC-GCGAa -3'
miRNA:   3'- -UUG-CGGUCGUaCGCCGC---CCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 30662 0.68 0.527933
Target:  5'- uGCGCCGGaucuaccggGCGGCGcGGUCGGaCGAc -3'
miRNA:   3'- uUGCGGUCgua------CGCCGC-CCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 33498 0.74 0.243163
Target:  5'- cGCGCCAGaCccGCGGCGucccgaagugagcccGGCCGGCGGa -3'
miRNA:   3'- uUGCGGUC-GuaCGCCGC---------------CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 33631 0.66 0.671975
Target:  5'- -uCGCCgaGGCGagaggcGCGcGCGGGCgCGGCGGa -3'
miRNA:   3'- uuGCGG--UCGUa-----CGC-CGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 41606 0.67 0.575304
Target:  5'- -uUGCCGGcCGUGaacucgaccuCGGUguuggGGGCCAGCGAg -3'
miRNA:   3'- uuGCGGUC-GUAC----------GCCG-----CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 42577 0.69 0.473144
Target:  5'- gGGCGCCgcgaGGCGaGCGGCGGGgCGGaccCGAa -3'
miRNA:   3'- -UUGCGG----UCGUaCGCCGCCCgGUC---GCU- -5'
8952 5' -62.8 NC_002512.2 + 42702 0.71 0.364732
Target:  5'- cGGCGCCGGCAcGCcgaagauGGCGGGCCA-CGu -3'
miRNA:   3'- -UUGCGGUCGUaCG-------CCGCCCGGUcGCu -5'
8952 5' -62.8 NC_002512.2 + 44164 0.67 0.621632
Target:  5'- cGACGCgCAGCuugguaucgaaGCGGCGGuggucGCgCAGCGAg -3'
miRNA:   3'- -UUGCG-GUCGua---------CGCCGCC-----CG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 45267 0.66 0.659424
Target:  5'- -cCGCCGGCGggGCGcucgcgcucgucucGCGGGUCGGaCGGa -3'
miRNA:   3'- uuGCGGUCGUa-CGC--------------CGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 45429 0.69 0.476711
Target:  5'- cGGCGCCGGCc-GCGGCGacucccuguccgacGCCGGCGGc -3'
miRNA:   3'- -UUGCGGUCGuaCGCCGCc-------------CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 45511 0.73 0.308171
Target:  5'- cACGCCGaaagcGCccGCGGCGGGCggCGGCGGc -3'
miRNA:   3'- uUGCGGU-----CGuaCGCCGCCCG--GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 46724 0.66 0.681597
Target:  5'- uACGUCauGGCGgcgGCGGCGGGgaAGCGc -3'
miRNA:   3'- uUGCGG--UCGUa--CGCCGCCCggUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.