Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8952 | 5' | -62.8 | NC_002512.2 | + | 122794 | 0.7 | 0.413072 |
Target: 5'- gGGCGCCgGGCccugGCGGCGGGuccccuacguCCAGCGc -3' miRNA: 3'- -UUGCGG-UCGua--CGCCGCCC----------GGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 3058 | 0.71 | 0.380926 |
Target: 5'- uGACGgCGGCGgacGCGGCGGcGgCGGCGGc -3' miRNA: 3'- -UUGCgGUCGUa--CGCCGCC-CgGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 10547 | 0.73 | 0.282189 |
Target: 5'- gGACGCCgGGCAgcCGGCGGGCCAcGCcGAc -3' miRNA: 3'- -UUGCGG-UCGUacGCCGCCCGGU-CG-CU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 155368 | 0.73 | 0.275971 |
Target: 5'- cGGCGCUcgaGGUcgggGCGGCGGcGCCGGCGGg -3' miRNA: 3'- -UUGCGG---UCGua--CGCCGCC-CGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 116716 | 0.74 | 0.269863 |
Target: 5'- cGACGCCGgucGCGUcccgcccggccGCGGCGaGGCCGGCGc -3' miRNA: 3'- -UUGCGGU---CGUA-----------CGCCGC-CCGGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 9216 | 0.74 | 0.252192 |
Target: 5'- -uCGcCCAGCAcgacGCGGCGGGCCAGgUGGc -3' miRNA: 3'- uuGC-GGUCGUa---CGCCGCCCGGUC-GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 33498 | 0.74 | 0.243163 |
Target: 5'- cGCGCCAGaCccGCGGCGucccgaagugagcccGGCCGGCGGa -3' miRNA: 3'- uUGCGGUC-GuaCGCCGC---------------CCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 136208 | 0.75 | 0.209711 |
Target: 5'- cGACGCCGGCggccugGUGCGcGgGGGUCAGCGu -3' miRNA: 3'- -UUGCGGUCG------UACGC-CgCCCGGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 120785 | 0.75 | 0.204857 |
Target: 5'- -cCGUCGGCGgggGCGGCGGGaCGGCGGc -3' miRNA: 3'- uuGCGGUCGUa--CGCCGCCCgGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 97196 | 0.78 | 0.132927 |
Target: 5'- cGACGCCcgucuGCG-GCGGCGGGCCGGgCGGg -3' miRNA: 3'- -UUGCGGu----CGUaCGCCGCCCGGUC-GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 101108 | 0.73 | 0.294957 |
Target: 5'- --gGCCAGCGcGCGGCGcGGCguGCGc -3' miRNA: 3'- uugCGGUCGUaCGCCGC-CCGguCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 45511 | 0.73 | 0.308171 |
Target: 5'- cACGCCGaaagcGCccGCGGCGGGCggCGGCGGc -3' miRNA: 3'- uUGCGGU-----CGuaCGCCGCCCG--GUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 107918 | 0.71 | 0.373155 |
Target: 5'- -cCGCCGGCggGCGGggaccCGGGUCAGCu- -3' miRNA: 3'- uuGCGGUCGuaCGCC-----GCCCGGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 17516 | 0.71 | 0.365492 |
Target: 5'- cGACGUCGGCGU-CGGCGuaggcGGCCAGCu- -3' miRNA: 3'- -UUGCGGUCGUAcGCCGC-----CCGGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 42702 | 0.71 | 0.364732 |
Target: 5'- cGGCGCCGGCAcGCcgaagauGGCGGGCCA-CGu -3' miRNA: 3'- -UUGCGGUCGUaCG-------CCGCCCGGUcGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 82336 | 0.72 | 0.350495 |
Target: 5'- -cCGCCccGGCGgguaGCGGUGGGCguGCGGg -3' miRNA: 3'- uuGCGG--UCGUa---CGCCGCCCGguCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 83815 | 0.72 | 0.343162 |
Target: 5'- cGCGCCGGCGgcgGCGGCuccGGGCCcgggucgucgcaGGCGc -3' miRNA: 3'- uUGCGGUCGUa--CGCCG---CCCGG------------UCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 130150 | 0.72 | 0.33594 |
Target: 5'- --gGCCgcggGGCccgGCGGCGGGCCGGCc- -3' miRNA: 3'- uugCGG----UCGua-CGCCGCCCGGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 54237 | 0.72 | 0.328125 |
Target: 5'- aGACGCacucgcacguccgCAGCGgcaggGCGGCGGcGUCGGCGAc -3' miRNA: 3'- -UUGCG-------------GUCGUa----CGCCGCC-CGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 74188 | 0.72 | 0.321832 |
Target: 5'- aGGCGCCGGCAcaggGCGGCgacguccguGGGCUcGCGGu -3' miRNA: 3'- -UUGCGGUCGUa---CGCCG---------CCCGGuCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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