miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 9064 0.66 0.642963
Target:  5'- cGACGagcaCGGCcaGCGGCGGGaCCAcgaGCGGg -3'
miRNA:   3'- -UUGCg---GUCGuaCGCCGCCC-GGU---CGCU- -5'
8952 5' -62.8 NC_002512.2 + 129097 0.66 0.642963
Target:  5'- gGACgGgCGGCGucUGCGGCGGGCgGuccucuGCGAc -3'
miRNA:   3'- -UUG-CgGUCGU--ACGCCGCCCGgU------CGCU- -5'
8952 5' -62.8 NC_002512.2 + 170183 0.67 0.633267
Target:  5'- uGCGCCAGCGUGauGUucucGGCCAugaGCGGg -3'
miRNA:   3'- uUGCGGUCGUACgcCGc---CCGGU---CGCU- -5'
8952 5' -62.8 NC_002512.2 + 103673 0.67 0.633267
Target:  5'- gAGCGCCucgacgucGCAgaggGCGGCGGaCgCGGCGGg -3'
miRNA:   3'- -UUGCGGu-------CGUa---CGCCGCCcG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 83259 0.67 0.633267
Target:  5'- -cCGCCAGCA-GCuGGCGGaucGUCGGCa- -3'
miRNA:   3'- uuGCGGUCGUaCG-CCGCC---CGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 119179 0.67 0.630358
Target:  5'- cAACGCCAuGCAgcuggcccuggcccUGCGGCG-GCUGcGCGAg -3'
miRNA:   3'- -UUGCGGU-CGU--------------ACGCCGCcCGGU-CGCU- -5'
8952 5' -62.8 NC_002512.2 + 135620 0.67 0.623571
Target:  5'- gGACGCCAGCGaguucuCGGgGGuccgggucGCCGGCGGc -3'
miRNA:   3'- -UUGCGGUCGUac----GCCgCC--------CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 135208 0.67 0.623571
Target:  5'- -cCGCCAGCggGcCGGgGGGCCccccGGCc- -3'
miRNA:   3'- uuGCGGUCGuaC-GCCgCCCGG----UCGcu -5'
8952 5' -62.8 NC_002512.2 + 82041 0.67 0.623571
Target:  5'- cGCGCCGGCGgcggucGCGGCGGGaggagucGCGc -3'
miRNA:   3'- uUGCGGUCGUa-----CGCCGCCCggu----CGCu -5'
8952 5' -62.8 NC_002512.2 + 161906 0.67 0.623571
Target:  5'- cGCGCCGGCccuccucCGGCGGacGCCacGGCGAa -3'
miRNA:   3'- uUGCGGUCGuac----GCCGCC--CGG--UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 51184 0.67 0.623571
Target:  5'- --gGCCAGCAacGCGGCGG-CCGcgcuGCGGg -3'
miRNA:   3'- uugCGGUCGUa-CGCCGCCcGGU----CGCU- -5'
8952 5' -62.8 NC_002512.2 + 113667 0.67 0.623571
Target:  5'- -cCGCgAGgGUGCGcGCGGGUCGGaCGu -3'
miRNA:   3'- uuGCGgUCgUACGC-CGCCCGGUC-GCu -5'
8952 5' -62.8 NC_002512.2 + 8919 0.67 0.622602
Target:  5'- --gGCCAGg--GCGGCcucggccGGGUCGGCGAu -3'
miRNA:   3'- uugCGGUCguaCGCCG-------CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 44164 0.67 0.621632
Target:  5'- cGACGCgCAGCuugguaucgaaGCGGCGGuggucGCgCAGCGAg -3'
miRNA:   3'- -UUGCG-GUCGua---------CGCCGCC-----CG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 178415 0.67 0.613881
Target:  5'- uACGCCAggucuucguGCAguugGCGGauCGGGUCGGCGc -3'
miRNA:   3'- uUGCGGU---------CGUa---CGCC--GCCCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 93355 0.67 0.613881
Target:  5'- cAugGCCAGCGUGCagucccgggaggGGauCGGGCCgcagGGCGc -3'
miRNA:   3'- -UugCGGUCGUACG------------CC--GCCCGG----UCGCu -5'
8952 5' -62.8 NC_002512.2 + 153954 0.67 0.613881
Target:  5'- gGACGUCGGguUcuucggggucCGGCGGcGCCGGCGGc -3'
miRNA:   3'- -UUGCGGUCguAc---------GCCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 82206 0.67 0.613881
Target:  5'- --gGCCGGCGUccucccgggGCGGgaagcgGGGCCGGUGAc -3'
miRNA:   3'- uugCGGUCGUA---------CGCCg-----CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 222532 0.67 0.612912
Target:  5'- --gGCCGcCGUcGCGGUGGGCCgggcuacGGCGAc -3'
miRNA:   3'- uugCGGUcGUA-CGCCGCCCGG-------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 88595 0.67 0.604203
Target:  5'- -cCGCCGGUgccgccGUGC-GCGcGGCCGGCGu -3'
miRNA:   3'- uuGCGGUCG------UACGcCGC-CCGGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.