miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 5262 0.74 0.227162
Target:  5'- gGCCGCggcggcgaccccgaGCCCGGucGGcACCGCGUCCCgCGc -3'
miRNA:   3'- gCGGCG--------------CGGGCU--CC-UGGCGCAGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 147915 0.74 0.228657
Target:  5'- cCGCCGCcaccacccGCCCGGGGcucACCGCGcgccggCCCCu -3'
miRNA:   3'- -GCGGCG--------CGGGCUCC---UGGCGCa-----GGGGc -5'
8953 3' -66.3 NC_002512.2 + 131060 0.74 0.228657
Target:  5'- gCGCCGCGCCgGAGGccgauCCGuCG-CUCCGg -3'
miRNA:   3'- -GCGGCGCGGgCUCCu----GGC-GCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 108427 0.73 0.233191
Target:  5'- gCGCCGCccggGgCCGGGGGCCGgGgggucccUCCCCGg -3'
miRNA:   3'- -GCGGCG----CgGGCUCCUGGCgC-------AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 138009 0.73 0.233699
Target:  5'- gCGCCGcCGCCCGcgccGGACgGCGgCCUCGg -3'
miRNA:   3'- -GCGGC-GCGGGCu---CCUGgCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 35172 0.73 0.233699
Target:  5'- aGCCGCGCCCcccu-CCGCGUCCuCCa -3'
miRNA:   3'- gCGGCGCGGGcuccuGGCGCAGG-GGc -5'
8953 3' -66.3 NC_002512.2 + 101701 0.73 0.238834
Target:  5'- cCGCCgGCgGCCCGcucGGcGACCuCGUCCCCGg -3'
miRNA:   3'- -GCGG-CG-CGGGC---UC-CUGGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 80474 0.73 0.238834
Target:  5'- cCGCCGCgguccccucgcgGCCCgucGAGGAgccggagucCUGCGUCCCCGc -3'
miRNA:   3'- -GCGGCG------------CGGG---CUCCU---------GGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 199469 0.73 0.238834
Target:  5'- gGCCGCGa-CGAcGcCCGCGUCCCCGu -3'
miRNA:   3'- gCGGCGCggGCUcCuGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 135262 0.73 0.238834
Target:  5'- gCGCCGCGCUCGAcgaggccuGGGCCGCcugcuucgggCCCCa -3'
miRNA:   3'- -GCGGCGCGGGCU--------CCUGGCGca--------GGGGc -5'
8953 3' -66.3 NC_002512.2 + 25076 0.73 0.244064
Target:  5'- cCGCCGCGCCCccggGAcgcGGACCucccggGCGUCUCCu -3'
miRNA:   3'- -GCGGCGCGGG----CU---CCUGG------CGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 103166 0.73 0.244064
Target:  5'- gCGCCGCGCCCggcgaggacGAGGACCugaGCcUgCCCGg -3'
miRNA:   3'- -GCGGCGCGGG---------CUCCUGG---CGcAgGGGC- -5'
8953 3' -66.3 NC_002512.2 + 145396 0.73 0.249388
Target:  5'- aCGCgGCGUCCGGGGuCCGgGUCUUCu -3'
miRNA:   3'- -GCGgCGCGGGCUCCuGGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 28017 0.73 0.249388
Target:  5'- cCGCCGcCGUCCucGGACCGCaggCCCCa -3'
miRNA:   3'- -GCGGC-GCGGGcuCCUGGCGca-GGGGc -5'
8953 3' -66.3 NC_002512.2 + 162238 0.73 0.249388
Target:  5'- aGcCCGCGUCCGGGGgcccguggacgACCGUGUCgCCGu -3'
miRNA:   3'- gC-GGCGCGGGCUCC-----------UGGCGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 140467 0.73 0.249388
Target:  5'- cCGCCGaCGCCCGAGGccugguuCCGCGcgaaCCUGg -3'
miRNA:   3'- -GCGGC-GCGGGCUCCu------GGCGCag--GGGC- -5'
8953 3' -66.3 NC_002512.2 + 77035 0.73 0.254261
Target:  5'- gGCUGCacguuccGCCUGGGGACCGCGaggCCCGa -3'
miRNA:   3'- gCGGCG-------CGGGCUCCUGGCGCag-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 102903 0.73 0.254808
Target:  5'- -cCCGCGCUgggaGAGGACCGCGgaCCCCu -3'
miRNA:   3'- gcGGCGCGGg---CUCCUGGCGCa-GGGGc -5'
8953 3' -66.3 NC_002512.2 + 132457 0.73 0.254808
Target:  5'- gCGgCGgGUCCGGGGAgCGCGcgucucUCCCCGg -3'
miRNA:   3'- -GCgGCgCGGGCUCCUgGCGC------AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 222432 0.73 0.254808
Target:  5'- aGCCGCGCCgCGGcuucccccGGGCCGCGgccaaCCUCGc -3'
miRNA:   3'- gCGGCGCGG-GCU--------CCUGGCGCa----GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.