miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 95874 0.75 0.18315
Target:  5'- gGCCGCGCgCCGAGGAucUCGagGUCgCCCGg -3'
miRNA:   3'- gCGGCGCG-GGCUCCU--GGCg-CAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 83153 0.75 0.18315
Target:  5'- uCGUCGgGCCCGGcGGCCGCGgccgccgCCCCGc -3'
miRNA:   3'- -GCGGCgCGGGCUcCUGGCGCa------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 57203 0.75 0.187314
Target:  5'- gGUCGCGCaggacggagaCGAGGGCCgagacgcggGCGUCCCCGc -3'
miRNA:   3'- gCGGCGCGg---------GCUCCUGG---------CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 96878 0.75 0.191561
Target:  5'- uCGCgGCGCacuucCCGGGGGCCGgGUUCCCc -3'
miRNA:   3'- -GCGgCGCG-----GGCUCCUGGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 107214 0.75 0.191561
Target:  5'- gGCCGCGgCCGGGGAgCCGCgGUCaCCGu -3'
miRNA:   3'- gCGGCGCgGGCUCCU-GGCG-CAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 137072 0.75 0.191561
Target:  5'- gCGCCGCGCCCGggaacAGGcCCGCGgugugCgCCCa -3'
miRNA:   3'- -GCGGCGCGGGC-----UCCuGGCGCa----G-GGGc -5'
8953 3' -66.3 NC_002512.2 + 94975 0.75 0.193283
Target:  5'- aCGCCGCGCCgGuccgcguacAGGugCGCGuccgagcaguccaggUCCCCGa -3'
miRNA:   3'- -GCGGCGCGGgC---------UCCugGCGC---------------AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 167502 0.75 0.195892
Target:  5'- gGCCGUGUCCGAGGGCgccaUGCGgcUCUCCGa -3'
miRNA:   3'- gCGGCGCGGGCUCCUG----GCGC--AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 105182 0.75 0.195892
Target:  5'- uGCaCGCGCCCcAGGACgGCGUgCgCCCGg -3'
miRNA:   3'- gCG-GCGCGGGcUCCUGgCGCA-G-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 84323 0.75 0.195892
Target:  5'- gCGUCGCGCgCCGcAGcGucGCCGCGUCCUCGa -3'
miRNA:   3'- -GCGGCGCG-GGC-UC-C--UGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 126416 0.75 0.195892
Target:  5'- cCGCCGCcgagaCCCGA--GCCGCGUCCUCGg -3'
miRNA:   3'- -GCGGCGc----GGGCUccUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 223195 0.74 0.204811
Target:  5'- gGCCGC-CCgaCGGGGACgGCGUCCCgGa -3'
miRNA:   3'- gCGGCGcGG--GCUCCUGgCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 15228 0.74 0.208015
Target:  5'- uCGCCgagGCGCCgggaggagagacugCGAGGcggcCCGCGUCCCCGc -3'
miRNA:   3'- -GCGG---CGCGG--------------GCUCCu---GGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 121406 0.74 0.213608
Target:  5'- aGCCGCGCCUGgcguggaGGGAgacgcCCGCGgagucggCCCCGg -3'
miRNA:   3'- gCGGCGCGGGC-------UCCU-----GGCGCa------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 92580 0.74 0.21408
Target:  5'- aCGCCGCGgCCGggaGGGGCgGCGgUCCCGa -3'
miRNA:   3'- -GCGGCGCgGGC---UCCUGgCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 132499 0.74 0.21408
Target:  5'- uCGUCGCGCCCGcccccgucuccGGccGCCGCGgUCCCCGc -3'
miRNA:   3'- -GCGGCGCGGGCu----------CC--UGGCGC-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 18526 0.74 0.218367
Target:  5'- uGCCGCGCCgGGcGGucaggccGCgCGCGUCCCCc -3'
miRNA:   3'- gCGGCGCGGgCU-CC-------UG-GCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 222152 0.74 0.218848
Target:  5'- -uCCGCcCCCGAGGACCGCuaUCCCGa -3'
miRNA:   3'- gcGGCGcGGGCUCCUGGCGcaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 213007 0.74 0.223707
Target:  5'- cCGUCGgGCCCGGGGcCCucucgagguGCGUCCgCCGg -3'
miRNA:   3'- -GCGGCgCGGGCUCCuGG---------CGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 219410 0.74 0.224198
Target:  5'- cCGCCGCgacgcccacGCCCGGGGcggcggcggccuccuCCGCGcCCCCGu -3'
miRNA:   3'- -GCGGCG---------CGGGCUCCu--------------GGCGCaGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.