miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 8159 0.71 0.307987
Target:  5'- cCGCCagGCGCUCGGGGAUCucgGCGUagcaCCCGa -3'
miRNA:   3'- -GCGG--CGCGGGCUCCUGG---CGCAg---GGGC- -5'
8953 3' -66.3 NC_002512.2 + 8434 0.7 0.383935
Target:  5'- gGCCG-GUCgGAcGACCGCG-CCCCGg -3'
miRNA:   3'- gCGGCgCGGgCUcCUGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 8731 0.69 0.437517
Target:  5'- cCGCgCGCGCCCGcccgucgacgacgGGGACgCG-GUCCUCa -3'
miRNA:   3'- -GCG-GCGCGGGC-------------UCCUG-GCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 8772 0.68 0.454658
Target:  5'- gCGCCGuCGgaagcuCCCGAGGaggcGCCggaggGCGUCCCCc -3'
miRNA:   3'- -GCGGC-GC------GGGCUCC----UGG-----CGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 10079 0.67 0.549685
Target:  5'- uGUCGCGCCCcg----CGCGUCCCCu -3'
miRNA:   3'- gCGGCGCGGGcuccugGCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 10176 0.66 0.567695
Target:  5'- cCGCCucucGCGcCCCGAGcGCCGacgcuccuccuCGUCCUCGg -3'
miRNA:   3'- -GCGG----CGC-GGGCUCcUGGC-----------GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 10957 0.68 0.454658
Target:  5'- aCGCCgGCGCCCucGGGCCaggcaGCGgcacgagccgCCCCGc -3'
miRNA:   3'- -GCGG-CGCGGGcuCCUGG-----CGCa---------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 11588 0.69 0.44645
Target:  5'- aGCgGcCGCCC-AGGGCCGgGgaCCCCGa -3'
miRNA:   3'- gCGgC-GCGGGcUCCUGGCgCa-GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 11677 0.7 0.376538
Target:  5'- cCGCCGCgGCCCGAGG-CgGgGg-CCCGa -3'
miRNA:   3'- -GCGGCG-CGGGCUCCuGgCgCagGGGC- -5'
8953 3' -66.3 NC_002512.2 + 12096 0.69 0.414468
Target:  5'- aCGCCGaucCGCCaGccGGCCGCGaCCCCGg -3'
miRNA:   3'- -GCGGC---GCGGgCucCUGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 12429 0.67 0.514239
Target:  5'- uCGCCGCGCgCGAGGcgggaGCUGgGcUUCUCGg -3'
miRNA:   3'- -GCGGCGCGgGCUCC-----UGGCgC-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 12757 0.68 0.504651
Target:  5'- aGCUGgGCCCGcugcugccgccgcAGGACUcggcgGCGcCCCCGc -3'
miRNA:   3'- gCGGCgCGGGC-------------UCCUGG-----CGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 13565 0.66 0.592233
Target:  5'- cCGaCCGCGUCgGGGccgcagaugcagguGACCcaCGUCCCCGg -3'
miRNA:   3'- -GC-GGCGCGGgCUC--------------CUGGc-GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 13726 0.66 0.613273
Target:  5'- aCGCgGgaGCCUGAGGGgCGCGaCgCCGg -3'
miRNA:   3'- -GCGgCg-CGGGCUCCUgGCGCaGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 14631 0.66 0.576757
Target:  5'- gGCCGCGCuuGAGGaagGCgGCGUagCUGu -3'
miRNA:   3'- gCGGCGCGggCUCC---UGgCGCAggGGC- -5'
8953 3' -66.3 NC_002512.2 + 14685 0.66 0.594972
Target:  5'- cCGCCcCGCCgacgaaGAGGuagacCCGCGuccgcUCCCCGa -3'
miRNA:   3'- -GCGGcGCGGg-----CUCCu----GGCGC-----AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 15228 0.74 0.208015
Target:  5'- uCGCCgagGCGCCgggaggagagacugCGAGGcggcCCGCGUCCCCGc -3'
miRNA:   3'- -GCGG---CGCGG--------------GCUCCu---GGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 15450 0.69 0.44645
Target:  5'- uCGCCGaCGUagaCGGGGACgCG-GUCCUCGg -3'
miRNA:   3'- -GCGGC-GCGg--GCUCCUG-GCgCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 16058 0.66 0.57585
Target:  5'- gCGCCGCGCCuCGAgacucucguccagGGaACCcucccgggccgaGCGUCCCa- -3'
miRNA:   3'- -GCGGCGCGG-GCU-------------CC-UGG------------CGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 16193 0.69 0.398252
Target:  5'- aGCCa-GUUCGAGGACCGCGggcgacgccgggcUCCCCu -3'
miRNA:   3'- gCGGcgCGGGCUCCUGGCGC-------------AGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.