miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 81056 0.66 0.594972
Target:  5'- gCGgUGCGCCC--GGACCGC--CCCCa -3'
miRNA:   3'- -GCgGCGCGGGcuCCUGGCGcaGGGGc -5'
8953 3' -66.3 NC_002512.2 + 135622 0.66 0.576757
Target:  5'- aCGCCaGCGaguuCUCGGGGGuCCGgGUCgCCGg -3'
miRNA:   3'- -GCGG-CGC----GGGCUCCU-GGCgCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 14631 0.66 0.576757
Target:  5'- gGCCGCGCuuGAGGaagGCgGCGUagCUGu -3'
miRNA:   3'- gCGGCGCGggCUCC---UGgCGCAggGGC- -5'
8953 3' -66.3 NC_002512.2 + 13565 0.66 0.592233
Target:  5'- cCGaCCGCGUCgGGGccgcagaugcagguGACCcaCGUCCCCGg -3'
miRNA:   3'- -GC-GGCGCGGgCUC--------------CUGGc-GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 29693 0.66 0.594972
Target:  5'- uCGUCGCGCUCguccgucucgGAGGAgcccaugaCCGUGUCgCCCu -3'
miRNA:   3'- -GCGGCGCGGG----------CUCCU--------GGCGCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 139272 0.66 0.594972
Target:  5'- cCGCCcgGCGCgCGGGGGCgaaggggggCGCccgCCCCGg -3'
miRNA:   3'- -GCGG--CGCGgGCUCCUG---------GCGca-GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 76496 0.66 0.602284
Target:  5'- cCGCCGCGCUCcacgucgcuccGGACCGCcagCCgCCGc -3'
miRNA:   3'- -GCGGCGCGGGcu---------CCUGGCGca-GG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 127489 0.66 0.576757
Target:  5'- gGCCGcCGCCCucGGGCgggaGCaUCCCCu -3'
miRNA:   3'- gCGGC-GCGGGcuCCUGg---CGcAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 5164 0.66 0.576757
Target:  5'- aGCgGCGCgaCCG-GGGCgGCGgccggCCCCa -3'
miRNA:   3'- gCGgCGCG--GGCuCCUGgCGCa----GGGGc -5'
8953 3' -66.3 NC_002512.2 + 69749 0.66 0.604114
Target:  5'- aCGCgGCGCCC--GGAUCGCcaCCUCGc -3'
miRNA:   3'- -GCGgCGCGGGcuCCUGGCGcaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 45926 0.66 0.576757
Target:  5'- gCGaCGaCGCCCGAGcg-CGCGUCCCgGg -3'
miRNA:   3'- -GCgGC-GCGGGCUCcugGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 96951 0.66 0.604114
Target:  5'- gCGUCGCGCcgaCCGucGuCCGCGUCUuCCGc -3'
miRNA:   3'- -GCGGCGCG---GGCucCuGGCGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 118226 0.66 0.604114
Target:  5'- gGCCcucGUGCUCGGGGACgGCaccGUCCUgGa -3'
miRNA:   3'- gCGG---CGCGGGCUCCUGgCG---CAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 103129 0.66 0.594972
Target:  5'- cCGCCGCGcCCCGAG----GCGUCUCgGg -3'
miRNA:   3'- -GCGGCGC-GGGCUCcuggCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 125013 0.66 0.576757
Target:  5'- gGCCagggaCGCCCGcGGGGCCGagGUCgCCGu -3'
miRNA:   3'- gCGGc----GCGGGC-UCCUGGCg-CAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 134701 0.66 0.594972
Target:  5'- uCGCCGggcUGCCCGAcauccuggGGGCCGgGggaaggCUCCGg -3'
miRNA:   3'- -GCGGC---GCGGGCU--------CCUGGCgCa-----GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 44016 0.66 0.589496
Target:  5'- uGCCaGCgGCCCGAGGcgcccuccucgacguACCGC-UCCCa- -3'
miRNA:   3'- gCGG-CG-CGGGCUCC---------------UGGCGcAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 127395 0.66 0.594972
Target:  5'- cCGuCCGcCGCCUGcGGGACCGCcaCCgCGa -3'
miRNA:   3'- -GC-GGC-GCGGGC-UCCUGGCGcaGGgGC- -5'
8953 3' -66.3 NC_002512.2 + 116957 0.66 0.585851
Target:  5'- gGCuCGCGCgCCaccGGGCCGCcgacgCCCCGu -3'
miRNA:   3'- gCG-GCGCG-GGcu-CCUGGCGca---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 83003 0.66 0.594972
Target:  5'- aGCUGCGCCUGGGccuCCggGCGguaguggCCCCGc -3'
miRNA:   3'- gCGGCGCGGGCUCcu-GG--CGCa------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.