miRNA display CGI


Results 1 - 20 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 20335 0.66 0.576757
Target:  5'- aGaCCGCGCUCcgagacgauguaGAGGAuCCGgGUCUCCu -3'
miRNA:   3'- gC-GGCGCGGG------------CUCCU-GGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 127489 0.66 0.576757
Target:  5'- gGCCGcCGCCCucGGGCgggaGCaUCCCCu -3'
miRNA:   3'- gCGGC-GCGGGcuCCUGg---CGcAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 134239 0.66 0.585851
Target:  5'- gGCUGUGCCgGGGGcgGCCGagcCGcCCCCu -3'
miRNA:   3'- gCGGCGCGGgCUCC--UGGC---GCaGGGGc -5'
8953 3' -66.3 NC_002512.2 + 68923 0.66 0.567695
Target:  5'- cCGCCGCgGCCuCGGGGGgauccccccUCGUGaCCCCc -3'
miRNA:   3'- -GCGGCG-CGG-GCUCCU---------GGCGCaGGGGc -5'
8953 3' -66.3 NC_002512.2 + 41222 0.66 0.585851
Target:  5'- cCGCCGCGgUCGGacgacGGGCCGCcgccgCCgCCGg -3'
miRNA:   3'- -GCGGCGCgGGCU-----CCUGGCGca---GG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 136430 0.66 0.576757
Target:  5'- cCGCCacgaucccgGCGCUCGAGcGCUGgGUCUCCu -3'
miRNA:   3'- -GCGG---------CGCGGGCUCcUGGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 125013 0.66 0.576757
Target:  5'- gGCCagggaCGCCCGcGGGGCCGagGUCgCCGu -3'
miRNA:   3'- gCGGc----GCGGGC-UCCUGGCg-CAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 71577 0.66 0.567695
Target:  5'- -cUCGCGCCgGAcGACCGCGgCCuuGg -3'
miRNA:   3'- gcGGCGCGGgCUcCUGGCGCaGGggC- -5'
8953 3' -66.3 NC_002512.2 + 2147 0.66 0.566791
Target:  5'- uCGCCucccccgucacgGCGgUCGAGGAgucggggaccguaCCGCGcCCCCGc -3'
miRNA:   3'- -GCGG------------CGCgGGCUCCU-------------GGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 5164 0.66 0.576757
Target:  5'- aGCgGCGCgaCCG-GGGCgGCGgccggCCCCa -3'
miRNA:   3'- gCGgCGCG--GGCuCCUGgCGCa----GGGGc -5'
8953 3' -66.3 NC_002512.2 + 16058 0.66 0.57585
Target:  5'- gCGCCGCGCCuCGAgacucucguccagGGaACCcucccgggccgaGCGUCCCa- -3'
miRNA:   3'- -GCGGCGCGG-GCU-------------CC-UGG------------CGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 116957 0.66 0.585851
Target:  5'- gGCuCGCGCgCCaccGGGCCGCcgacgCCCCGu -3'
miRNA:   3'- gCG-GCGCG-GGcu-CCUGGCGca---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 130125 0.66 0.585851
Target:  5'- aGCUGgagGCCCGGGGuggugucgcgGCCGCGgggCCCGg -3'
miRNA:   3'- gCGGCg--CGGGCUCC----------UGGCGCag-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 78811 0.66 0.585851
Target:  5'- cCGgCGCGgaCCGA-GACCGCaUCCCCc -3'
miRNA:   3'- -GCgGCGCg-GGCUcCUGGCGcAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 121760 0.66 0.567695
Target:  5'- uCG-CGCGCCUcucGGGACCGCGgaCCgCCGa -3'
miRNA:   3'- -GCgGCGCGGGc--UCCUGGCGCa-GG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 109360 0.66 0.567695
Target:  5'- aGCC--GCCgGGGGaaaGCCGCGccUCCCCGu -3'
miRNA:   3'- gCGGcgCGGgCUCC---UGGCGC--AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 14631 0.66 0.576757
Target:  5'- gGCCGCGCuuGAGGaagGCgGCGUagCUGu -3'
miRNA:   3'- gCGGCGCGggCUCC---UGgCGCAggGGC- -5'
8953 3' -66.3 NC_002512.2 + 10176 0.66 0.567695
Target:  5'- cCGCCucucGCGcCCCGAGcGCCGacgcuccuccuCGUCCUCGg -3'
miRNA:   3'- -GCGG----CGC-GGGCUCcUGGC-----------GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 45926 0.66 0.576757
Target:  5'- gCGaCGaCGCCCGAGcg-CGCGUCCCgGg -3'
miRNA:   3'- -GCgGC-GCGGGCUCcugGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 135622 0.66 0.576757
Target:  5'- aCGCCaGCGaguuCUCGGGGGuCCGgGUCgCCGg -3'
miRNA:   3'- -GCGG-CGC----GGGCUCCU-GGCgCAGgGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.