miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 222432 0.73 0.254808
Target:  5'- aGCCGCGCCgCGGcuucccccGGGCCGCGgccaaCCUCGc -3'
miRNA:   3'- gCGGCGCGG-GCU--------CCUGGCGCa----GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 222336 0.66 0.58221
Target:  5'- gGCgGCGCCUccaggagGAGGaggagcggcacgggGCCGCcuUCCCCGg -3'
miRNA:   3'- gCGgCGCGGG-------CUCC--------------UGGCGc-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 222152 0.74 0.218848
Target:  5'- -uCCGCcCCCGAGGACCGCuaUCCCGa -3'
miRNA:   3'- gcGGCGcGGGCUCCUGGCGcaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 221457 0.69 0.422332
Target:  5'- gCGCgGuCGUCCGAccggccgcGGugCGCGUUCCUGg -3'
miRNA:   3'- -GCGgC-GCGGGCU--------CCugGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 221129 0.81 0.06849
Target:  5'- cCGaCgGCG-CUGAGGACCGCGUCCCCGu -3'
miRNA:   3'- -GC-GgCGCgGGCUCCUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 220832 0.66 0.604114
Target:  5'- gGCCGUGCUCGucgacGGGCUGUGUCgCg- -3'
miRNA:   3'- gCGGCGCGGGCu----CCUGGCGCAGgGgc -5'
8953 3' -66.3 NC_002512.2 + 220379 0.69 0.438325
Target:  5'- cCGCCGUGCUgGGGccGGCCGuCGUCuaCCCGc -3'
miRNA:   3'- -GCGGCGCGGgCUC--CUGGC-GCAG--GGGC- -5'
8953 3' -66.3 NC_002512.2 + 220301 0.7 0.369238
Target:  5'- cCGCCGagcCGCCgGGGGGCCGgGggccgggCUCCGg -3'
miRNA:   3'- -GCGGC---GCGGgCUCCUGGCgCa------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 219680 0.67 0.55867
Target:  5'- gGCgCGcCGCCCGAGGACgaggaggaGCGUCggcgCUCGg -3'
miRNA:   3'- gCG-GC-GCGGGCUCCUGg-------CGCAG----GGGC- -5'
8953 3' -66.3 NC_002512.2 + 219410 0.74 0.224198
Target:  5'- cCGCCGCgacgcccacGCCCGGGGcggcggcggccuccuCCGCGcCCCCGu -3'
miRNA:   3'- -GCGGCG---------CGGGCUCCu--------------GGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 218923 0.77 0.126617
Target:  5'- uGCCGCugcccugGCCCGAGGgcGCCgGCGUCCUCGu -3'
miRNA:   3'- gCGGCG-------CGGGCUCC--UGG-CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 218645 0.7 0.354931
Target:  5'- uGUCGCGCCCGGcGGACggagGCGgauaCCCGg -3'
miRNA:   3'- gCGGCGCGGGCU-CCUGg---CGCag--GGGC- -5'
8953 3' -66.3 NC_002512.2 + 218499 0.66 0.622444
Target:  5'- uCGuCCGCGUCCGAgccgucGGACCccuCGUCgUCCGa -3'
miRNA:   3'- -GC-GGCGCGGGCU------CCUGGc--GCAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 218455 0.7 0.376538
Target:  5'- cCGCgGCGucCCCGcGGACCGCGgucaucUCCUCGu -3'
miRNA:   3'- -GCGgCGC--GGGCuCCUGGCGC------AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 218109 0.68 0.504651
Target:  5'- gCGUCGCGCCCGGGGucgcucggguagaACaCGuCGUCgUCGu -3'
miRNA:   3'- -GCGGCGCGGGCUCC-------------UG-GC-GCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 218056 0.69 0.438325
Target:  5'- uCGCCGCGUcgUCGGGGAucaggguguaCC-CGUCCCUGu -3'
miRNA:   3'- -GCGGCGCG--GGCUCCU----------GGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 217878 0.68 0.462947
Target:  5'- aG-CGCGUCCGAGaucggcGGCCGCGUCgUCGa -3'
miRNA:   3'- gCgGCGCGGGCUC------CUGGCGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 217787 0.66 0.594972
Target:  5'- gGUCGCGgCCGGcuggcGGAUCgGCGUCgCCGu -3'
miRNA:   3'- gCGGCGCgGGCU-----CCUGG-CGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 217742 0.66 0.613273
Target:  5'- gGaCCGCGaCuuGAagaagaaccccGGGCC-CGUCCCCGu -3'
miRNA:   3'- gC-GGCGC-GggCU-----------CCUGGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 217501 0.66 0.621527
Target:  5'- cCGCCGcCGCCCGAaggcgagcucgggGGGUCGCGguUCaCCUGg -3'
miRNA:   3'- -GCGGC-GCGGGCU-------------CCUGGCGC--AG-GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.