miRNA display CGI


Results 1 - 20 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 227483 0.67 0.523019
Target:  5'- gGCCG-GCCgCGAGGagguaggagacGCCGCGaCCCgGg -3'
miRNA:   3'- gCGGCgCGG-GCUCC-----------UGGCGCaGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 227377 0.67 0.523019
Target:  5'- cCGCCgGCGUCgGGGGAgauCCGU-UCCCCa -3'
miRNA:   3'- -GCGG-CGCGGgCUCCU---GGCGcAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 227059 0.69 0.406696
Target:  5'- cCGCCGuCGUCCG-GGcCCGCG-CCCgCGc -3'
miRNA:   3'- -GCGGC-GCGGGCuCCuGGCGCaGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 226813 0.7 0.383935
Target:  5'- cCGCCGUGgCCGccGccgccGCCGCGUCCgCCGc -3'
miRNA:   3'- -GCGGCGCgGGCucC-----UGGCGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 226635 0.73 0.265937
Target:  5'- gGaCCGaGCCCGcGGACCGuCGUCaCCCGa -3'
miRNA:   3'- gC-GGCgCGGGCuCCUGGC-GCAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 226490 0.7 0.362035
Target:  5'- aCGCCGUGguccUCUGGGGACCuGUGggCCCCGc -3'
miRNA:   3'- -GCGGCGC----GGGCUCCUGG-CGCa-GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 226402 0.73 0.260324
Target:  5'- gCGCCGgGaCCCGucGcguCCGCGUCUCCGg -3'
miRNA:   3'- -GCGGCgC-GGGCucCu--GGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 225901 0.66 0.576757
Target:  5'- -cCCGCcuCCCGAGGAgaCGCGUCgaCCGa -3'
miRNA:   3'- gcGGCGc-GGGCUCCUg-GCGCAGg-GGC- -5'
8953 3' -66.3 NC_002512.2 + 225789 0.67 0.549685
Target:  5'- gGCUGCGCCgGccGGGCCGCGggcggCCGg -3'
miRNA:   3'- gCGGCGCGGgCu-CCUGGCGCagg--GGC- -5'
8953 3' -66.3 NC_002512.2 + 225488 0.66 0.622444
Target:  5'- uCGaCCGCGaucuaCGGGGccGCCGCGggggUCCCGg -3'
miRNA:   3'- -GC-GGCGCgg---GCUCC--UGGCGCa---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 225033 0.66 0.613273
Target:  5'- aCGCgGCGaacCCCGcgauGGCCGCGcUCCUCGg -3'
miRNA:   3'- -GCGgCGC---GGGCuc--CUGGCGC-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 224910 0.69 0.422332
Target:  5'- uCGCCGUcugcaccuccGUCgCGGGGACCGgGUCCgugCCGg -3'
miRNA:   3'- -GCGGCG----------CGG-GCUCCUGGCgCAGG---GGC- -5'
8953 3' -66.3 NC_002512.2 + 224703 0.66 0.604114
Target:  5'- uGCC-CGCCCugcuGGGGCCGgcCGccgCCCCGg -3'
miRNA:   3'- gCGGcGCGGGc---UCCUGGC--GCa--GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 224618 0.7 0.383935
Target:  5'- cCGaCCGgGCUCGGGGucgccGCCGCGgCCUCGg -3'
miRNA:   3'- -GC-GGCgCGGGCUCC-----UGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 224520 0.66 0.604114
Target:  5'- gCGCCagaGCCgGAGGACCacagGUCCCgGg -3'
miRNA:   3'- -GCGGcg-CGGgCUCCUGGcg--CAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 224347 0.69 0.409794
Target:  5'- gCGCCGCGCCggggucgcgggCGGGaGACCucgguccgggaccucGCGaCCCCGg -3'
miRNA:   3'- -GCGGCGCGG-----------GCUC-CUGG---------------CGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 223533 0.78 0.121126
Target:  5'- gGCaCGCGCCCGcGGcCCGCGgCCCCGc -3'
miRNA:   3'- gCG-GCGCGGGCuCCuGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 223195 0.74 0.204811
Target:  5'- gGCCGC-CCgaCGGGGACgGCGUCCCgGa -3'
miRNA:   3'- gCGGCGcGG--GCUCCUGgCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 222688 0.69 0.44645
Target:  5'- uCGaCUGCGCCCggcacgggGAGGAgUGCGUCgCCa -3'
miRNA:   3'- -GC-GGCGCGGG--------CUCCUgGCGCAGgGGc -5'
8953 3' -66.3 NC_002512.2 + 222574 0.66 0.621527
Target:  5'- cCGCCGCgGCCCgccgucgcgGAGGAggccuguCCG-GcCCCCGg -3'
miRNA:   3'- -GCGGCG-CGGG---------CUCCU-------GGCgCaGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.