miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 17901 0.71 0.334212
Target:  5'- gGCgGCGgcCCCGAGGacgacgGCCGCGUCCUg- -3'
miRNA:   3'- gCGgCGC--GGGCUCC------UGGCGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 18137 0.7 0.369238
Target:  5'- cCGCaGCGCCCG-GG-CCGCGUCgCgGg -3'
miRNA:   3'- -GCGgCGCGGGCuCCuGGCGCAGgGgC- -5'
8953 3' -66.3 NC_002512.2 + 18526 0.74 0.218367
Target:  5'- uGCCGCGCCgGGcGGucaggccGCgCGCGUCCCCc -3'
miRNA:   3'- gCGGCGCGGgCU-CC-------UG-GCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 19063 0.68 0.50552
Target:  5'- gGCCGUGUCCcaccGGAgCGCGagCCCGa -3'
miRNA:   3'- gCGGCGCGGGcu--CCUgGCGCagGGGC- -5'
8953 3' -66.3 NC_002512.2 + 20335 0.66 0.576757
Target:  5'- aGaCCGCGCUCcgagacgauguaGAGGAuCCGgGUCUCCu -3'
miRNA:   3'- gC-GGCGCGGG------------CUCCU-GGCgCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 21763 0.66 0.576757
Target:  5'- uGCCGauaaCCGuGG-CCGCGUCUCUGg -3'
miRNA:   3'- gCGGCgcg-GGCuCCuGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 24237 0.77 0.142513
Target:  5'- gCGUCGgGCCCGccGACgGCGUCCCCc -3'
miRNA:   3'- -GCGGCgCGGGCucCUGgCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 24505 0.69 0.44645
Target:  5'- cCGCCGCcuuCCUGGGccuGACCGCcUUCCCGg -3'
miRNA:   3'- -GCGGCGc--GGGCUC---CUGGCGcAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 25076 0.73 0.244064
Target:  5'- cCGCCGCGCCCccggGAcgcGGACCucccggGCGUCUCCu -3'
miRNA:   3'- -GCGGCGCGGG----CU---CCUGG------CGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 26546 0.69 0.414468
Target:  5'- aGCU-CGCCCGAGGGCugcaagauCGCGgCCCUGg -3'
miRNA:   3'- gCGGcGCGGGCUCCUG--------GCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 26694 0.7 0.369238
Target:  5'- aCGCCGUGCUgGcGGuGACCuggcugGCGUCCCUGa -3'
miRNA:   3'- -GCGGCGCGGgC-UC-CUGG------CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 27225 0.67 0.55867
Target:  5'- cCGCCGUGCCCuGAGGGa-GCGggCCgGg -3'
miRNA:   3'- -GCGGCGCGGG-CUCCUggCGCagGGgC- -5'
8953 3' -66.3 NC_002512.2 + 28017 0.73 0.249388
Target:  5'- cCGCCGcCGUCCucGGACCGCaggCCCCa -3'
miRNA:   3'- -GCGGC-GCGGGcuCCUGGCGca-GGGGc -5'
8953 3' -66.3 NC_002512.2 + 29052 0.69 0.422332
Target:  5'- gCGCCGCGCCCccgcuGACCuucGCGUCCaugCCGu -3'
miRNA:   3'- -GCGGCGCGGGcuc--CUGG---CGCAGG---GGC- -5'
8953 3' -66.3 NC_002512.2 + 29579 0.71 0.327506
Target:  5'- aGCCGCucCCCGAGGGCgGaCGagCCCCa -3'
miRNA:   3'- gCGGCGc-GGGCUCCUGgC-GCa-GGGGc -5'
8953 3' -66.3 NC_002512.2 + 29693 0.66 0.594972
Target:  5'- uCGUCGCGCUCguccgucucgGAGGAgcccaugaCCGUGUCgCCCu -3'
miRNA:   3'- -GCGGCGCGGG----------CUCCU--------GGCGCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 30279 0.7 0.369238
Target:  5'- aGCCgGCGCCaugGAGGAggcccCCGCGUCCgaCGa -3'
miRNA:   3'- gCGG-CGCGGg--CUCCU-----GGCGCAGGg-GC- -5'
8953 3' -66.3 NC_002512.2 + 31823 0.67 0.539855
Target:  5'- gGUCGaggggaCGCgCGAGacgucccugugacGACCGCGUCCCCu -3'
miRNA:   3'- gCGGC------GCGgGCUC-------------CUGGCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 33060 0.67 0.523019
Target:  5'- cCGCCGCaGCCCGucgcagaagaAGGACUGgaggcUGUCgCCCa -3'
miRNA:   3'- -GCGGCG-CGGGC----------UCCUGGC-----GCAG-GGGc -5'
8953 3' -66.3 NC_002512.2 + 33477 0.73 0.265937
Target:  5'- gGCCGcCGCCCc----CCGCGUCCCCGc -3'
miRNA:   3'- gCGGC-GCGGGcuccuGGCGCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.