miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 200492 0.69 0.767474
Target:  5'- uGCGAGGGCGgcguccuccgaccgGGGCuCGUCcucacGCUGCUg -3'
miRNA:   3'- cCGCUCCUGC--------------UCCG-GCAGa----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 145498 0.67 0.875902
Target:  5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3'
miRNA:   3'- cCG-CUCCUGCucCGGCagaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 207523 0.73 0.556659
Target:  5'- -aCGAGGACGGGGCCGcgucCUcccGCUGCg- -3'
miRNA:   3'- ccGCUCCUGCUCCGGCa---GA---UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 201683 0.71 0.655155
Target:  5'- cGGCGAGGGC--GGCCGcgUCUGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGcuCCGGC--AGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 181410 0.69 0.751797
Target:  5'- cGcCGGGGACGcguucaggauGGCCGUCaGCUGCg- -3'
miRNA:   3'- cC-GCUCCUGCu---------CCGGCAGaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 199505 0.67 0.875902
Target:  5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3'
miRNA:   3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 210832 0.71 0.68469
Target:  5'- cGGUG-GGACacGGCCGUCUggggGCUGCUc -3'
miRNA:   3'- -CCGCuCCUGcuCCGGCAGA----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 200369 0.66 0.889429
Target:  5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3'
miRNA:   3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 117021 0.66 0.889429
Target:  5'- gGGCcgGAGGACGcGGCCaUCgagcuguucggGCUGCUg -3'
miRNA:   3'- -CCG--CUCCUGCuCCGGcAGa----------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 90568 0.68 0.796941
Target:  5'- gGGCGAGGGCGAcGGCCccgGUCUccuucccccgggGCggGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA------------UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 126913 0.7 0.742439
Target:  5'- cGGCGGGGG-GAGGCCGg--GCUgGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGGCagaUGA-CGaa -5'
8953 5' -57.7 NC_002512.2 + 214455 1.07 0.004041
Target:  5'- cGGCGAGGACGAGGCCGUCUACUGCUUc -3'
miRNA:   3'- -CCGCUCCUGCUCCGGCAGAUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 219230 0.7 0.70419
Target:  5'- cGGCGAGGuCGGgaucgugcucGGCCGcCUcugGCUGCUc -3'
miRNA:   3'- -CCGCUCCuGCU----------CCGGCaGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 109029 0.71 0.655155
Target:  5'- gGGCGGGGACGAGGaCCGggggg-GCUc -3'
miRNA:   3'- -CCGCUCCUGCUCC-GGCagaugaCGAa -5'
8953 5' -57.7 NC_002512.2 + 215150 0.72 0.595815
Target:  5'- gGGgGAGGcgACGAgcaccuGGCCGUCcUGCUGCUc -3'
miRNA:   3'- -CCgCUCC--UGCU------CCGGCAG-AUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 228669 0.73 0.53735
Target:  5'- cGGgGAGGACGGGGCCGgg-GCcGCc- -3'
miRNA:   3'- -CCgCUCCUGCUCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 95700 0.68 0.795195
Target:  5'- cGGCGGGGACGggGGGCCGggaggggaagACgGCUc -3'
miRNA:   3'- -CCGCUCCUGC--UCCGGCaga-------UGaCGAa -5'
8953 5' -57.7 NC_002512.2 + 190214 0.67 0.86156
Target:  5'- cGGCGcggucguccGGGACGGccaCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC---------UCCUGCUccgGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 167154 0.68 0.796941
Target:  5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3'
miRNA:   3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 43595 0.66 0.895876
Target:  5'- cGGCGucgcGGACGAGGaCgCGgagGCUGCg- -3'
miRNA:   3'- -CCGCu---CCUGCUCC-G-GCagaUGACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.