miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 200902 0.7 0.732991
Target:  5'- aGCGugaacGcCGAGGCCGUgUACUGCUUc -3'
miRNA:   3'- cCGCuc---CuGCUCCGGCAgAUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 101659 0.7 0.732991
Target:  5'- cGGCGGccgcGGACGccGGGCCGaUCUACgucgGCg- -3'
miRNA:   3'- -CCGCU----CCUGC--UCCGGC-AGAUGa---CGaa -5'
8953 5' -57.7 NC_002512.2 + 147446 0.7 0.732991
Target:  5'- uGCGcaGACGGcGGCCGUCUgucGCUGCUg -3'
miRNA:   3'- cCGCucCUGCU-CCGGCAGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 134162 0.7 0.731092
Target:  5'- cGGCGGGGACGGGgaGCCGUCUuccccucccgGCc- -3'
miRNA:   3'- -CCGCUCCUGCUC--CGGCAGAuga-------CGaa -5'
8953 5' -57.7 NC_002512.2 + 124564 0.7 0.723461
Target:  5'- cGGCGAGGAgGAGGCCcgggacGUCaAgaGCg- -3'
miRNA:   3'- -CCGCUCCUgCUCCGG------CAGaUgaCGaa -5'
8953 5' -57.7 NC_002512.2 + 129093 0.7 0.713858
Target:  5'- -cCGAGGACGGGcGgCGUCUGCgGCg- -3'
miRNA:   3'- ccGCUCCUGCUC-CgGCAGAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 200277 0.7 0.713858
Target:  5'- gGGaCGAGGACGAcGaGCCGUCggACUGg-- -3'
miRNA:   3'- -CC-GCUCCUGCU-C-CGGCAGa-UGACgaa -5'
8953 5' -57.7 NC_002512.2 + 131456 0.7 0.708064
Target:  5'- --gGAGGACGGGGCUGUCgcuaugggugcagagUGCUGUa- -3'
miRNA:   3'- ccgCUCCUGCUCCGGCAG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 185385 0.7 0.70419
Target:  5'- cGGCGGcGGcuGCGAGGCCGUCUuCUccGCc- -3'
miRNA:   3'- -CCGCU-CC--UGCUCCGGCAGAuGA--CGaa -5'
8953 5' -57.7 NC_002512.2 + 219230 0.7 0.70419
Target:  5'- cGGCGAGGuCGGgaucgugcucGGCCGcCUcugGCUGCUc -3'
miRNA:   3'- -CCGCUCCuGCU----------CCGGCaGA---UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 146113 0.7 0.70419
Target:  5'- cGGCGGcGGCGGcGCCGUCUuCUGCa- -3'
miRNA:   3'- -CCGCUcCUGCUcCGGCAGAuGACGaa -5'
8953 5' -57.7 NC_002512.2 + 210832 0.71 0.68469
Target:  5'- cGGUG-GGACacGGCCGUCUggggGCUGCUc -3'
miRNA:   3'- -CCGCuCCUGcuCCGGCAGA----UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 226089 0.71 0.68469
Target:  5'- cGGCuGAGGagGCGucGCCGUCUucauCUGCUg -3'
miRNA:   3'- -CCG-CUCC--UGCucCGGCAGAu---GACGAa -5'
8953 5' -57.7 NC_002512.2 + 2299 0.71 0.674875
Target:  5'- uGCGGGuGGCGGGGC--UCUGCUGCg- -3'
miRNA:   3'- cCGCUC-CUGCUCCGgcAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 124204 0.71 0.665028
Target:  5'- gGGacaGAGGcaccGCGAGuaccgcGCCGUCUGCUGCg- -3'
miRNA:   3'- -CCg--CUCC----UGCUC------CGGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 109029 0.71 0.655155
Target:  5'- gGGCGGGGACGAGGaCCGggggg-GCUc -3'
miRNA:   3'- -CCGCUCCUGCUCC-GGCagaugaCGAa -5'
8953 5' -57.7 NC_002512.2 + 201683 0.71 0.655155
Target:  5'- cGGCGAGGGC--GGCCGcgUCUGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGcuCCGGC--AGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 118197 0.71 0.645265
Target:  5'- cGCGAcccCGAGGCCGUCUGgUGCg- -3'
miRNA:   3'- cCGCUccuGCUCCGGCAGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 9547 0.71 0.635366
Target:  5'- cGGCGuuGACGAGGCCGUCcg--GCc- -3'
miRNA:   3'- -CCGCucCUGCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 220546 0.72 0.615568
Target:  5'- cGCGAGGGCGucacGCCGUCUACcugGCc- -3'
miRNA:   3'- cCGCUCCUGCuc--CGGCAGAUGa--CGaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.