miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 107207 0.71 0.585258
Target:  5'- -aCUCGCCCGggccCcUCGCCGUC-ACCUg -3'
miRNA:   3'- uaGAGCGGGCa---GuGGCGGCAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 108730 0.67 0.822207
Target:  5'- -cCUCGCCCugggccgcggccggcGUCucgGCCGCCGUCgacggguucgggUACCg -3'
miRNA:   3'- uaGAGCGGG---------------CAG---UGGCGGCAG------------AUGGa -5'
8954 5' -59.4 NC_002512.2 + 108954 0.66 0.85348
Target:  5'- -cCUUGCCCGUCGggucgcCCggguccgucagcaggGCCGUgUACCUg -3'
miRNA:   3'- uaGAGCGGGCAGU------GG---------------CGGCAgAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 111793 0.67 0.810645
Target:  5'- gGUC-CGCgCgGUCGCCGCCGgc-GCCg -3'
miRNA:   3'- -UAGaGCG-GgCAGUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 112373 0.68 0.748915
Target:  5'- uGUC-CGUCC-UCACCGCCGUCaGCg- -3'
miRNA:   3'- -UAGaGCGGGcAGUGGCGGCAGaUGga -5'
8954 5' -59.4 NC_002512.2 + 112893 0.72 0.546812
Target:  5'- uUCUCGUCgGUCGCCGC-GUCgcggACCa -3'
miRNA:   3'- uAGAGCGGgCAGUGGCGgCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 116014 0.67 0.827068
Target:  5'- cUUUCGCUcggaccgcuaCGUCAUgGCCGUCUugCc -3'
miRNA:   3'- uAGAGCGG----------GCAGUGgCGGCAGAugGa -5'
8954 5' -59.4 NC_002512.2 + 117352 0.67 0.810645
Target:  5'- uUCUU-CCUGccCGCCGCCGUCUGCa- -3'
miRNA:   3'- uAGAGcGGGCa-GUGGCGGCAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 119041 0.7 0.614435
Target:  5'- cGUCguggGCCUGuUCGCCGCgcaCGUCUGCCUg -3'
miRNA:   3'- -UAGag--CGGGC-AGUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 121135 0.67 0.810645
Target:  5'- --aUCGCCCG-CGCCGCgcaCUGCCUc -3'
miRNA:   3'- uagAGCGGGCaGUGGCGgcaGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 123103 0.67 0.802209
Target:  5'- gGUCcggCGgaaCCGUCccGCCGCCGUCggcgGCCg -3'
miRNA:   3'- -UAGa--GCg--GGCAG--UGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 124095 0.68 0.776089
Target:  5'- cGUCuUCGCCC-UCGCCGUCGaccaUGCCg -3'
miRNA:   3'- -UAG-AGCGGGcAGUGGCGGCag--AUGGa -5'
8954 5' -59.4 NC_002512.2 + 126197 0.66 0.857928
Target:  5'- cUCcCGCCgCGUcCGCCGCCcUCUGCg- -3'
miRNA:   3'- uAGaGCGG-GCA-GUGGCGGcAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 126225 0.67 0.802209
Target:  5'- cGUCgaggCGCUCGUgGCCGCCGaggaggGCCg -3'
miRNA:   3'- -UAGa---GCGGGCAgUGGCGGCaga---UGGa -5'
8954 5' -59.4 NC_002512.2 + 126837 0.7 0.624193
Target:  5'- cGUCgCGCUCGUCGCgGUCGUC-GCCg -3'
miRNA:   3'- -UAGaGCGGGCAGUGgCGGCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 128260 0.67 0.810645
Target:  5'- -cCUCGUCCGaCGgguCCGCCGUC-ACCc -3'
miRNA:   3'- uaGAGCGGGCaGU---GGCGGCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 128336 0.71 0.575586
Target:  5'- -cCUCGacuccgucCCCGcCGCCGCCGUCU-CCUu -3'
miRNA:   3'- uaGAGC--------GGGCaGUGGCGGCAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 128378 0.66 0.835041
Target:  5'- -cCUC-CCCGUCGCCGgcggcggaccCCGUCUcgaGCCc -3'
miRNA:   3'- uaGAGcGGGCAGUGGC----------GGCAGA---UGGa -5'
8954 5' -59.4 NC_002512.2 + 128966 0.67 0.818934
Target:  5'- uUCUCcgGCCUGUCuuccuACCGCCGg--GCCUu -3'
miRNA:   3'- uAGAG--CGGGCAG-----UGGCGGCagaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 129609 0.68 0.776088
Target:  5'- -aCUCGCCCcgcUCGCCGagcuCCGUCU-CCUc -3'
miRNA:   3'- uaGAGCGGGc--AGUGGC----GGCAGAuGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.