miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 218048 0.67 0.827068
Target:  5'- -cCUC-CCCGUCGCCGCguCGUCggggAUCa -3'
miRNA:   3'- uaGAGcGGGCAGUGGCG--GCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 3474 0.74 0.420626
Target:  5'- uUCUCGCCaucuccauCGUCGCCGCCGaCU-CCUg -3'
miRNA:   3'- uAGAGCGG--------GCAGUGGCGGCaGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 172004 0.76 0.342011
Target:  5'- --gUCG-CCGUCGCCGCCGUC-GCCUg -3'
miRNA:   3'- uagAGCgGGCAGUGGCGGCAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 216190 0.72 0.546812
Target:  5'- gAUCgCGCCCGugaUCACCGCCG-CgGCCg -3'
miRNA:   3'- -UAGaGCGGGC---AGUGGCGGCaGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 2969 0.71 0.594961
Target:  5'- cGUCUucCGCCCcuUCGCCGUCGUCUuCCg -3'
miRNA:   3'- -UAGA--GCGGGc-AGUGGCGGCAGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 225452 0.69 0.682614
Target:  5'- ---gCGCCCGgCAccCCGCCGgUCUACCa -3'
miRNA:   3'- uagaGCGGGCaGU--GGCGGC-AGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 131262 0.72 0.537319
Target:  5'- cGUCUCGCUCGUCACgGCCaucCUGCg- -3'
miRNA:   3'- -UAGAGCGGGCAGUGgCGGca-GAUGga -5'
8954 5' -59.4 NC_002512.2 + 2004 0.66 0.865193
Target:  5'- -aCUCGCCCGcgUCGCCugaGCCGgc-ACCa -3'
miRNA:   3'- uaGAGCGGGC--AGUGG---CGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 23679 0.66 0.865193
Target:  5'- uUCaaGCCCcagCACCGCCG-CUGCUUc -3'
miRNA:   3'- uAGagCGGGca-GUGGCGGCaGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 126197 0.66 0.857928
Target:  5'- cUCcCGCCgCGUcCGCCGCCcUCUGCg- -3'
miRNA:   3'- uAGaGCGG-GCA-GUGGCGGcAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 103227 0.66 0.857928
Target:  5'- -gCUCGC--GUCGCCGCCcGUCgacgGCCg -3'
miRNA:   3'- uaGAGCGggCAGUGGCGG-CAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 124095 0.68 0.776089
Target:  5'- cGUCuUCGCCC-UCGCCGUCGaccaUGCCg -3'
miRNA:   3'- -UAG-AGCGGGcAGUGGCGGCag--AUGGa -5'
8954 5' -59.4 NC_002512.2 + 41310 0.68 0.776089
Target:  5'- gGUCgaCGCagaccgagaagUCGUCGCCGCCGgagCUGCCc -3'
miRNA:   3'- -UAGa-GCG-----------GGCAGUGGCGGCa--GAUGGa -5'
8954 5' -59.4 NC_002512.2 + 9673 0.67 0.793632
Target:  5'- -aCUCGuccCCCGg-GCCGCCGUCggGCCc -3'
miRNA:   3'- uaGAGC---GGGCagUGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 69231 0.68 0.748915
Target:  5'- --gUC-CCCGUCGCCGCgGUCgauCCa -3'
miRNA:   3'- uagAGcGGGCAGUGGCGgCAGau-GGa -5'
8954 5' -59.4 NC_002512.2 + 112373 0.68 0.748915
Target:  5'- uGUC-CGUCC-UCACCGCCGUCaGCg- -3'
miRNA:   3'- -UAGaGCGGGcAGUGGCGGCAGaUGga -5'
8954 5' -59.4 NC_002512.2 + 27364 0.67 0.793632
Target:  5'- cGUC-CGCCCc-CGCCGCCGcCUccGCCUc -3'
miRNA:   3'- -UAGaGCGGGcaGUGGCGGCaGA--UGGA- -5'
8954 5' -59.4 NC_002512.2 + 22277 0.7 0.663213
Target:  5'- -aCUCGCCgccgcagcaGcCGCCGCCGUCgcagGCCa -3'
miRNA:   3'- uaGAGCGGg--------CaGUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 82923 0.7 0.65932
Target:  5'- aGUCUCGgCCGcgGCCGCCGUCgucgcgcuucacgGCCa -3'
miRNA:   3'- -UAGAGCgGGCagUGGCGGCAGa------------UGGa -5'
8954 5' -59.4 NC_002512.2 + 119041 0.7 0.614435
Target:  5'- cGUCguggGCCUGuUCGCCGCgcaCGUCUGCCUg -3'
miRNA:   3'- -UAGag--CGGGC-AGUGGCG---GCAGAUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.