miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 140211 0.68 0.767137
Target:  5'- cAUCUCGCCC--CGCCGCCuUCgcACCg -3'
miRNA:   3'- -UAGAGCGGGcaGUGGCGGcAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 129609 0.68 0.776088
Target:  5'- -aCUCGCCCcgcUCGCCGagcuCCGUCU-CCUc -3'
miRNA:   3'- uaGAGCGGGc--AGUGGC----GGCAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 147956 0.67 0.827068
Target:  5'- cUC-CGCCC-UCGCCGUCGUCgucccCCUc -3'
miRNA:   3'- uAGaGCGGGcAGUGGCGGCAGau---GGA- -5'
8954 5' -59.4 NC_002512.2 + 1693 0.66 0.857928
Target:  5'- uAUC-CGCCCGUCcCCGCU-UCU-CCUg -3'
miRNA:   3'- -UAGaGCGGGCAGuGGCGGcAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 2969 0.71 0.594961
Target:  5'- cGUCUucCGCCCcuUCGCCGUCGUCUuCCg -3'
miRNA:   3'- -UAGA--GCGGGc-AGUGGCGGCAGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 155325 0.69 0.692262
Target:  5'- gAUCUCGCCaaccucgcuccCGUCGCCGCgG-CcGCCUg -3'
miRNA:   3'- -UAGAGCGG-----------GCAGUGGCGgCaGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 173694 0.67 0.784045
Target:  5'- ----aGUUCGUCACCGCCGUCcugggacUGCCc -3'
miRNA:   3'- uagagCGGGCAGUGGCGGCAG-------AUGGa -5'
8954 5' -59.4 NC_002512.2 + 99619 0.66 0.857928
Target:  5'- ---gCGCUCGUCGCgGUCGUCgcCCUc -3'
miRNA:   3'- uagaGCGGGCAGUGgCGGCAGauGGA- -5'
8954 5' -59.4 NC_002512.2 + 163648 0.69 0.692262
Target:  5'- cAUCUacgggcgGCCCGUCACCGCCagcugGCCg -3'
miRNA:   3'- -UAGAg------CGGGCAGUGGCGGcaga-UGGa -5'
8954 5' -59.4 NC_002512.2 + 56152 0.66 0.865193
Target:  5'- uGUCUCaCCUGUC-CCGuuGUCUGUCUc -3'
miRNA:   3'- -UAGAGcGGGCAGuGGCggCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 222521 0.68 0.776088
Target:  5'- ---cCGCCCGcCgcgGCCGCCGUCgcgguggGCCg -3'
miRNA:   3'- uagaGCGGGCaG---UGGCGGCAGa------UGGa -5'
8954 5' -59.4 NC_002512.2 + 106704 0.69 0.7209
Target:  5'- -cCUCGuCCCGUC-CCGCC-UCgGCCUc -3'
miRNA:   3'- uaGAGC-GGGCAGuGGCGGcAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 224886 0.67 0.793632
Target:  5'- -cCUCGCCgGcCGCCuucgacccguucGCCGUCUGCa- -3'
miRNA:   3'- uaGAGCGGgCaGUGG------------CGGCAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 220542 0.67 0.818934
Target:  5'- -gCUgCGCgagggCGUCA-CGCCGUCUACCUg -3'
miRNA:   3'- uaGA-GCGg----GCAGUgGCGGCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 128378 0.66 0.835041
Target:  5'- -cCUC-CCCGUCGCCGgcggcggaccCCGUCUcgaGCCc -3'
miRNA:   3'- uaGAGcGGGCAGUGGC----------GGCAGA---UGGa -5'
8954 5' -59.4 NC_002512.2 + 206543 0.66 0.850477
Target:  5'- -gCUCGCCgcacuCGUaCACCGCCGgcgGCCc -3'
miRNA:   3'- uaGAGCGG-----GCA-GUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 171934 0.72 0.546812
Target:  5'- -cUUCGCCCGccgCGCCGCgccCGUCUAUCUc -3'
miRNA:   3'- uaGAGCGGGCa--GUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 128336 0.71 0.575586
Target:  5'- -cCUCGacuccgucCCCGcCGCCGCCGUCU-CCUu -3'
miRNA:   3'- uaGAGC--------GGGCaGUGGCGGCAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 74505 0.7 0.663212
Target:  5'- --aUCGCCCGccggCGCCGCCGcCccgACCUc -3'
miRNA:   3'- uagAGCGGGCa---GUGGCGGCaGa--UGGA- -5'
8954 5' -59.4 NC_002512.2 + 149877 0.69 0.692262
Target:  5'- -cCUCGUCCGgcuccgGCUGCCG-CUGCCUg -3'
miRNA:   3'- uaGAGCGGGCag----UGGCGGCaGAUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.