Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8954 | 5' | -59.4 | NC_002512.2 | + | 197134 | 0.66 | 0.865193 |
Target: 5'- cAUCggCGCCCugggcuacaagGUCGCCacgGCCGUCUuCCa -3' miRNA: 3'- -UAGa-GCGGG-----------CAGUGG---CGGCAGAuGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 173694 | 0.67 | 0.784045 |
Target: 5'- ----aGUUCGUCACCGCCGUCcugggacUGCCc -3' miRNA: 3'- uagagCGGGCAGUGGCGGCAG-------AUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 129609 | 0.68 | 0.776088 |
Target: 5'- -aCUCGCCCcgcUCGCCGagcuCCGUCU-CCUc -3' miRNA: 3'- uaGAGCGGGc--AGUGGC----GGCAGAuGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 214044 | 1.05 | 0.004233 |
Target: 5'- cAUCUCGCCCGUCACCGCCGUCUACCUc -3' miRNA: 3'- -UAGAGCGGGCAGUGGCGGCAGAUGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 206543 | 0.66 | 0.850477 |
Target: 5'- -gCUCGCCgcacuCGUaCACCGCCGgcgGCCc -3' miRNA: 3'- uaGAGCGG-----GCA-GUGGCGGCagaUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 218606 | 0.66 | 0.842846 |
Target: 5'- gGUCUCGCCCGcggacUCGaaggaCGCgCGUCgggACCc -3' miRNA: 3'- -UAGAGCGGGC-----AGUg----GCG-GCAGa--UGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 128378 | 0.66 | 0.835041 |
Target: 5'- -cCUC-CCCGUCGCCGgcggcggaccCCGUCUcgaGCCc -3' miRNA: 3'- uaGAGcGGGCAGUGGC----------GGCAGA---UGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 99714 | 0.66 | 0.835041 |
Target: 5'- -cCUCGUCCG-CGCCGUCGcggGCCg -3' miRNA: 3'- uaGAGCGGGCaGUGGCGGCagaUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 220542 | 0.67 | 0.818934 |
Target: 5'- -gCUgCGCgagggCGUCA-CGCCGUCUACCUg -3' miRNA: 3'- uaGA-GCGg----GCAGUgGCGGCAGAUGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 223359 | 0.67 | 0.784923 |
Target: 5'- uUCUcCGCCCGcCGauCCGgCGUCUAUCa -3' miRNA: 3'- uAGA-GCGGGCaGU--GGCgGCAGAUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 111793 | 0.67 | 0.810645 |
Target: 5'- gGUC-CGCgCgGUCGCCGCCGgc-GCCg -3' miRNA: 3'- -UAGaGCG-GgCAGUGGCGGCagaUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 147956 | 0.67 | 0.827068 |
Target: 5'- cUC-CGCCC-UCGCCGUCGUCgucccCCUc -3' miRNA: 3'- uAGaGCGGGcAGUGGCGGCAGau---GGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 56152 | 0.66 | 0.865193 |
Target: 5'- uGUCUCaCCUGUC-CCGuuGUCUGUCUc -3' miRNA: 3'- -UAGAGcGGGCAGuGGCggCAGAUGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 224886 | 0.67 | 0.793632 |
Target: 5'- -cCUCGCCgGcCGCCuucgacccguucGCCGUCUGCa- -3' miRNA: 3'- uaGAGCGGgCaGUGG------------CGGCAGAUGga -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 99619 | 0.66 | 0.857928 |
Target: 5'- ---gCGCUCGUCGCgGUCGUCgcCCUc -3' miRNA: 3'- uagaGCGGGCAGUGgCGGCAGauGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 218048 | 0.67 | 0.827068 |
Target: 5'- -cCUC-CCCGUCGCCGCguCGUCggggAUCa -3' miRNA: 3'- uaGAGcGGGCAGUGGCG--GCAGa---UGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 43071 | 0.67 | 0.784923 |
Target: 5'- uUCUCGCCgGUUAuCCGgC-UCUACCg -3' miRNA: 3'- uAGAGCGGgCAGU-GGCgGcAGAUGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 222521 | 0.68 | 0.776088 |
Target: 5'- ---cCGCCCGcCgcgGCCGCCGUCgcgguggGCCg -3' miRNA: 3'- uagaGCGGGCaG---UGGCGGCAGa------UGGa -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 1693 | 0.66 | 0.857928 |
Target: 5'- uAUC-CGCCCGUCcCCGCU-UCU-CCUg -3' miRNA: 3'- -UAGaGCGGGCAGuGGCGGcAGAuGGA- -5' |
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8954 | 5' | -59.4 | NC_002512.2 | + | 203187 | 0.66 | 0.835041 |
Target: 5'- ---aCGCCagccagGUCACCGCCagcacggcguacGUCUGCCg -3' miRNA: 3'- uagaGCGGg-----CAGUGGCGG------------CAGAUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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