miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 225452 0.69 0.682614
Target:  5'- ---gCGCCCGgCAccCCGCCGgUCUACCa -3'
miRNA:   3'- uagaGCGGGCaGU--GGCGGC-AGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 224950 0.76 0.32059
Target:  5'- gGUgUCGCUCGgcuCCGCCGUCUACCc -3'
miRNA:   3'- -UAgAGCGGGCaguGGCGGCAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 224886 0.67 0.793632
Target:  5'- -cCUCGCCgGcCGCCuucgacccguucGCCGUCUGCa- -3'
miRNA:   3'- uaGAGCGGgCaGUGG------------CGGCAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 223359 0.67 0.784923
Target:  5'- uUCUcCGCCCGcCGauCCGgCGUCUAUCa -3'
miRNA:   3'- uAGA-GCGGGCaGU--GGCgGCAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 222521 0.68 0.776088
Target:  5'- ---cCGCCCGcCgcgGCCGCCGUCgcgguggGCCg -3'
miRNA:   3'- uagaGCGGGCaG---UGGCGGCAGa------UGGa -5'
8954 5' -59.4 NC_002512.2 + 220542 0.67 0.818934
Target:  5'- -gCUgCGCgagggCGUCA-CGCCGUCUACCUg -3'
miRNA:   3'- uaGA-GCGg----GCAGUgGCGGCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 218606 0.66 0.842846
Target:  5'- gGUCUCGCCCGcggacUCGaaggaCGCgCGUCgggACCc -3'
miRNA:   3'- -UAGAGCGGGC-----AGUg----GCG-GCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 218048 0.67 0.827068
Target:  5'- -cCUC-CCCGUCGCCGCguCGUCggggAUCa -3'
miRNA:   3'- uaGAGcGGGCAGUGGCG--GCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 216190 0.72 0.546812
Target:  5'- gAUCgCGCCCGugaUCACCGCCG-CgGCCg -3'
miRNA:   3'- -UAGaGCGGGC---AGUGGCGGCaGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 214044 1.05 0.004233
Target:  5'- cAUCUCGCCCGUCACCGCCGUCUACCUc -3'
miRNA:   3'- -UAGAGCGGGCAGUGGCGGCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 206543 0.66 0.850477
Target:  5'- -gCUCGCCgcacuCGUaCACCGCCGgcgGCCc -3'
miRNA:   3'- uaGAGCGG-----GCA-GUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 205606 0.72 0.499968
Target:  5'- uGUCcCGCgggaugCCGUCGCCGCCGUCcuuCCUg -3'
miRNA:   3'- -UAGaGCG------GGCAGUGGCGGCAGau-GGA- -5'
8954 5' -59.4 NC_002512.2 + 203187 0.66 0.835041
Target:  5'- ---aCGCCagccagGUCACCGCCagcacggcguacGUCUGCCg -3'
miRNA:   3'- uagaGCGGg-----CAGUGGCGG------------CAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 197134 0.66 0.865193
Target:  5'- cAUCggCGCCCugggcuacaagGUCGCCacgGCCGUCUuCCa -3'
miRNA:   3'- -UAGa-GCGGG-----------CAGUGG---CGGCAGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 190321 0.74 0.412284
Target:  5'- uUgUCGCCCGUCGCCGCCcUUggcACCg -3'
miRNA:   3'- uAgAGCGGGCAGUGGCGGcAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 189254 0.68 0.730319
Target:  5'- cUCguaCGCUCGUCACCGCCGcguugacgcUCU-CCa -3'
miRNA:   3'- uAGa--GCGGGCAGUGGCGGC---------AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 189230 0.68 0.767137
Target:  5'- gAUC-CGUCCGUCGCCGUcgcggaCGUC-ACCg -3'
miRNA:   3'- -UAGaGCGGGCAGUGGCG------GCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 184463 0.69 0.701864
Target:  5'- --gUCGCCgCGgccggCGCCGCCGUCgagcGCCc -3'
miRNA:   3'- uagAGCGG-GCa----GUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 174145 0.69 0.692262
Target:  5'- -aCUCGCUCGaCACCGUgGUC-ACCg -3'
miRNA:   3'- uaGAGCGGGCaGUGGCGgCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 173694 0.67 0.784045
Target:  5'- ----aGUUCGUCACCGCCGUCcugggacUGCCc -3'
miRNA:   3'- uagagCGGGCAGUGGCGGCAG-------AUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.