miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 75288 0.69 0.813214
Target:  5'- gGCggcGGCGGCGACGaUGCcgcCGUCGc -3'
miRNA:   3'- gCGa--CCGCCGCUGUcACGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 122059 0.69 0.845539
Target:  5'- gGCUGGCGGUGAgCAG-GCUGaaGUgGc -3'
miRNA:   3'- gCGACCGCCGCU-GUCaCGAUagCAgC- -5'
8955 3' -56.8 NC_002512.2 + 126449 0.67 0.894978
Target:  5'- gGCgacGGCGGCGGCcgccuuGUucGCcGUCGUCGu -3'
miRNA:   3'- gCGa--CCGCCGCUGu-----CA--CGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 110049 0.71 0.722815
Target:  5'- ---aGGCGGCGGCGGUGCgcAUCGcCu -3'
miRNA:   3'- gcgaCCGCCGCUGUCACGa-UAGCaGc -5'
8955 3' -56.8 NC_002512.2 + 113726 0.67 0.893064
Target:  5'- aCGCgGGCGGCGAUcugcgggccgaGGUGCgcggUcauggagccgaccaGUCGUCGa -3'
miRNA:   3'- -GCGaCCGCCGCUG-----------UCACG----A--------------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 97421 0.69 0.853186
Target:  5'- gGCUGGCcaCGAUGGUGCUGgcgcUGUCGc -3'
miRNA:   3'- gCGACCGccGCUGUCACGAUa---GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 175278 0.71 0.71995
Target:  5'- aGCUGGCGGCcGCguacacguacucggGGUGCag-CGUCGa -3'
miRNA:   3'- gCGACCGCCGcUG--------------UCACGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 201705 0.68 0.888524
Target:  5'- uGCgGGauCGGCGGCGGcGUcGUCGUCGc -3'
miRNA:   3'- gCGaCC--GCCGCUGUCaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 108754 0.68 0.874989
Target:  5'- gGCagUGcGCGGCG-CGGgcgauccgGCUGUCGUCa -3'
miRNA:   3'- gCG--AC-CGCCGCuGUCa-------CGAUAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 146100 0.69 0.845539
Target:  5'- aCGCgguccucGGCGGCGGCGGcgGCgc-CGUCu -3'
miRNA:   3'- -GCGa------CCGCCGCUGUCa-CGauaGCAGc -5'
8955 3' -56.8 NC_002512.2 + 33195 0.7 0.787343
Target:  5'- gGCUGGCGG--ACGGUGCcgcUCGUCc -3'
miRNA:   3'- gCGACCGCCgcUGUCACGau-AGCAGc -5'
8955 3' -56.8 NC_002512.2 + 224975 0.72 0.691963
Target:  5'- cCGCUgGGCGGCGGCGGcgGCgcccucuuccCGUCGc -3'
miRNA:   3'- -GCGA-CCGCCGCUGUCa-CGaua-------GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 118610 0.69 0.853186
Target:  5'- cCGC-GGCGGCcgacauggagacGACGGUGCUGUgcaCGuUCGa -3'
miRNA:   3'- -GCGaCCGCCG------------CUGUCACGAUA---GC-AGC- -5'
8955 3' -56.8 NC_002512.2 + 191273 0.68 0.860647
Target:  5'- gGgaGGCGGCGACGGggaggGCgg-CGgggCGg -3'
miRNA:   3'- gCgaCCGCCGCUGUCa----CGauaGCa--GC- -5'
8955 3' -56.8 NC_002512.2 + 126776 0.68 0.874989
Target:  5'- gGCggcGGCGGCGACGcGUGCcgcgccCGUCc -3'
miRNA:   3'- gCGa--CCGCCGCUGU-CACGaua---GCAGc -5'
8955 3' -56.8 NC_002512.2 + 179643 0.68 0.881859
Target:  5'- aGCUGGauCGGCGACGGcgacGCgcUUGUCa -3'
miRNA:   3'- gCGACC--GCCGCUGUCa---CGauAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 188648 0.76 0.44536
Target:  5'- gCGCcGGCGGCGGCGGcgGCccGUCGUCc -3'
miRNA:   3'- -GCGaCCGCCGCUGUCa-CGa-UAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 160837 0.67 0.894978
Target:  5'- gGCgGGCGGcCGGCGGcGCUGggcgcaGUCGc -3'
miRNA:   3'- gCGaCCGCC-GCUGUCaCGAUag----CAGC- -5'
8955 3' -56.8 NC_002512.2 + 20299 0.67 0.907244
Target:  5'- aCG-UGGCGGUGACcGUGCcGgacgaggagcUCGUCGa -3'
miRNA:   3'- -GCgACCGCCGCUGuCACGaU----------AGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 6407 0.69 0.845539
Target:  5'- gGgaGGCGGCGGCGGcGCUGgggaaggcggcCGUCu -3'
miRNA:   3'- gCgaCCGCCGCUGUCaCGAUa----------GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.