Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 3' | -56.8 | NC_002512.2 | + | 12390 | 0.68 | 0.860647 |
Target: 5'- uCGCcuucgGGCGGCGGCGGcgGCgccgggAUCG-CGa -3' miRNA: 3'- -GCGa----CCGCCGCUGUCa-CGa-----UAGCaGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 116889 | 0.66 | 0.951539 |
Target: 5'- gGCUGGCGGCGGggcCGGgGCgggcUCcUCGg -3' miRNA: 3'- gCGACCGCCGCU---GUCaCGau--AGcAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 26406 | 0.68 | 0.860647 |
Target: 5'- uGCUGGCGaCG-CAGaUGCUGUCGa-- -3' miRNA: 3'- gCGACCGCcGCuGUC-ACGAUAGCagc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 6407 | 0.69 | 0.845539 |
Target: 5'- gGgaGGCGGCGGCGGcGCUGgggaaggcggcCGUCu -3' miRNA: 3'- gCgaCCGCCGCUGUCaCGAUa----------GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 121201 | 0.69 | 0.837711 |
Target: 5'- gCGCUGGC--CGACAGcGCccucGUCGUCGg -3' miRNA: 3'- -GCGACCGccGCUGUCaCGa---UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 34627 | 0.69 | 0.837711 |
Target: 5'- aGCUGuaacGCGGCGAgacaCAGgagGCU-UCGUCGg -3' miRNA: 3'- gCGAC----CGCCGCU----GUCa--CGAuAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 80676 | 0.72 | 0.674384 |
Target: 5'- cCGCggcGGCGGCGACGGggGCgagcggCGUCc -3' miRNA: 3'- -GCGa--CCGCCGCUGUCa-CGaua---GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 36441 | 0.68 | 0.881859 |
Target: 5'- cCGCUcccgccaccGGCGGCcGCGGUcgcGCUcguaGUCGUCGu -3' miRNA: 3'- -GCGA---------CCGCCGcUGUCA---CGA----UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 51928 | 0.68 | 0.887208 |
Target: 5'- aCGCUGGCGG-GACugaucacccaGCUGUCGgacgCGg -3' miRNA: 3'- -GCGACCGCCgCUGuca-------CGAUAGCa---GC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 202363 | 0.68 | 0.888524 |
Target: 5'- uGUccgGGCGGCGGCGG----GUCGUCGa -3' miRNA: 3'- gCGa--CCGCCGCUGUCacgaUAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 92009 | 0.66 | 0.943238 |
Target: 5'- uCGCcGGCGGCGGacucGCgggCGUCGg -3' miRNA: 3'- -GCGaCCGCCGCUgucaCGauaGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 81980 | 0.66 | 0.934062 |
Target: 5'- gGgUGGUGGCGGCGGggGCgucUCGggggCGg -3' miRNA: 3'- gCgACCGCCGCUGUCa-CGau-AGCa---GC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 22577 | 0.66 | 0.934062 |
Target: 5'- uGCUGGUgaacggcucggaGGCcACGGUGCUGgacaCGUCc -3' miRNA: 3'- gCGACCG------------CCGcUGUCACGAUa---GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 56303 | 0.66 | 0.929142 |
Target: 5'- uGCUGGCGGCGcCGGaGCUcggCG-Ca -3' miRNA: 3'- gCGACCGCCGCuGUCaCGAua-GCaGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 71140 | 0.67 | 0.924 |
Target: 5'- aGCagGGCGGCcAC-GUGUUccugGUCGUCGa -3' miRNA: 3'- gCGa-CCGCCGcUGuCACGA----UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 88273 | 0.67 | 0.918636 |
Target: 5'- ---aGGUGGCGGCAG-GCg--UGUCGg -3' miRNA: 3'- gcgaCCGCCGCUGUCaCGauaGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 86942 | 0.67 | 0.91305 |
Target: 5'- uCGgaGGagaCGGCGAUGGUgacGCUGUCgGUCGa -3' miRNA: 3'- -GCgaCC---GCCGCUGUCA---CGAUAG-CAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 22992 | 0.67 | 0.907244 |
Target: 5'- aCGCgGGCGGCGcUGGUGacCUAccCGUCGg -3' miRNA: 3'- -GCGaCCGCCGCuGUCAC--GAUa-GCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 80643 | 0.66 | 0.947497 |
Target: 5'- cCGUccGCGGCGGCGGcGCcggGUcCGUCGg -3' miRNA: 3'- -GCGacCGCCGCUGUCaCGa--UA-GCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 47015 | 0.67 | 0.907244 |
Target: 5'- uGCUGGCGGCGG-AGcUGCUGggCGa-- -3' miRNA: 3'- gCGACCGCCGCUgUC-ACGAUa-GCagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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