Results 21 - 40 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 159020 | 0.66 | 0.962044 |
Target: 5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3' miRNA: 3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 192894 | 0.66 | 0.958579 |
Target: 5'- aGCGCCGUcGCGCUCcgcggcgGUCcagagCCGCc -3' miRNA: 3'- aCGCGGUA-UGCGAGa------CAGcaga-GGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 222445 | 0.66 | 0.96836 |
Target: 5'- aGCGUCgcGUGCGCcguUCUcGUCGUucgacgauggaCUCCGUg -3' miRNA: 3'- aCGCGG--UAUGCG---AGA-CAGCA-----------GAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 191649 | 0.66 | 0.96836 |
Target: 5'- cUGuCGCCuuucuguCGCgagGcCGUCUCCGCu -3' miRNA: 3'- -AC-GCGGuau----GCGagaCaGCAGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 182633 | 0.67 | 0.938018 |
Target: 5'- cGCGCgAUcuucuccaGCGC-CUG-CGUCUCgGCc -3' miRNA: 3'- aCGCGgUA--------UGCGaGACaGCAGAGgCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 183899 | 0.67 | 0.948573 |
Target: 5'- -uUGCCAUaugGCGCUCUuUCGUCcaugaaccacaccgCCGCg -3' miRNA: 3'- acGCGGUA---UGCGAGAcAGCAGa-------------GGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 75088 | 0.67 | 0.946902 |
Target: 5'- gGCGCCGUuucggGgGCUCga-CGUCgCCGCc -3' miRNA: 3'- aCGCGGUA-----UgCGAGacaGCAGaGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 56722 | 0.67 | 0.946902 |
Target: 5'- gGUGCUGUagaugACGCUCuucuccUGUCGaUCUCUGUa -3' miRNA: 3'- aCGCGGUA-----UGCGAG------ACAGC-AGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 106322 | 0.67 | 0.946902 |
Target: 5'- aGCGCCuucgGCgGCUCUccccgGUCGcUCgucCCGCg -3' miRNA: 3'- aCGCGGua--UG-CGAGA-----CAGC-AGa--GGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 219026 | 0.67 | 0.93324 |
Target: 5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3' miRNA: 3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 196690 | 0.67 | 0.946902 |
Target: 5'- cGCGCCcaucggGCGC-CUGuUCGgUUCCGUg -3' miRNA: 3'- aCGCGGua----UGCGaGAC-AGCaGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 187459 | 0.67 | 0.942572 |
Target: 5'- gGCGgcCCGUGugagucCGCUCUGuaguuuUCGUCgUCCGCc -3' miRNA: 3'- aCGC--GGUAU------GCGAGAC------AGCAG-AGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 184402 | 0.67 | 0.938018 |
Target: 5'- cGcCGCCGggggGCGCUCgGcCuUCUCCGUc -3' miRNA: 3'- aC-GCGGUa---UGCGAGaCaGcAGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 148851 | 0.67 | 0.938018 |
Target: 5'- cGCuGCCGgaACGCcggCUGcCGcCUCCGCc -3' miRNA: 3'- aCG-CGGUa-UGCGa--GACaGCaGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 143224 | 0.67 | 0.938018 |
Target: 5'- cGCGCCGUcCGCUCggacgCGgccaCCGCg -3' miRNA: 3'- aCGCGGUAuGCGAGaca--GCaga-GGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 112200 | 0.67 | 0.928236 |
Target: 5'- gUGCGCCAcGCaGCUC-GUCGaC-CCGUa -3' miRNA: 3'- -ACGCGGUaUG-CGAGaCAGCaGaGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 45265 | 0.67 | 0.938018 |
Target: 5'- gGcCGCCGgcgggGCGCUCgcgcUCGUCU-CGCg -3' miRNA: 3'- aC-GCGGUa----UGCGAGac--AGCAGAgGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 121729 | 0.67 | 0.938018 |
Target: 5'- gGCGCCGgcgACGC-CggaggaGUCGgagUCUUCGCg -3' miRNA: 3'- aCGCGGUa--UGCGaGa-----CAGC---AGAGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 127948 | 0.67 | 0.942572 |
Target: 5'- gGCcCCGUuCGCUCUccGUCGgUCcCCGCa -3' miRNA: 3'- aCGcGGUAuGCGAGA--CAGC-AGaGGCG- -5' |
|||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 83170 | 0.67 | 0.946902 |
Target: 5'- cGCgGCCGc-CGCcccgCcGUCGUCUCCGUc -3' miRNA: 3'- aCG-CGGUauGCGa---GaCAGCAGAGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home