miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 96085 0.66 0.96836
Target:  5'- cGCaCCcgGCGCgaccGUCGUCcCCGCc -3'
miRNA:   3'- aCGcGGuaUGCGaga-CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96854 0.66 0.951012
Target:  5'- cUGCGCgAcuCGCUC-GUCGUCUUCu- -3'
miRNA:   3'- -ACGCGgUauGCGAGaCAGCAGAGGcg -5'
8955 5' -55.7 NC_002512.2 + 96997 0.66 0.964986
Target:  5'- cGuCGCCGgggACGC-C-GUCGUCgauuuccUCCGCg -3'
miRNA:   3'- aC-GCGGUa--UGCGaGaCAGCAG-------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 98122 0.69 0.880139
Target:  5'- cGCuuGCCGggGCGCUg-GUCGUCgcggCCGCc -3'
miRNA:   3'- aCG--CGGUa-UGCGAgaCAGCAGa---GGCG- -5'
8955 5' -55.7 NC_002512.2 + 99279 0.71 0.784122
Target:  5'- cGCGCCGg--GCUCU-UCGUCUCCu- -3'
miRNA:   3'- aCGCGGUaugCGAGAcAGCAGAGGcg -5'
8955 5' -55.7 NC_002512.2 + 100578 0.69 0.873152
Target:  5'- aGCGCCGgGCGCUCggGUgGggaaaCCGCg -3'
miRNA:   3'- aCGCGGUaUGCGAGa-CAgCaga--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 101399 0.68 0.917548
Target:  5'- gGCGCUGUcCGCcgaccgCUGUCG-CUgCCGCu -3'
miRNA:   3'- aCGCGGUAuGCGa-----GACAGCaGA-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 106322 0.67 0.946902
Target:  5'- aGCGCCuucgGCgGCUCUccccgGUCGcUCgucCCGCg -3'
miRNA:   3'- aCGCGGua--UG-CGAGA-----CAGC-AGa--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 108398 0.72 0.747342
Target:  5'- cGCGCCGccgaUGCuGCUgCUGcUCGUCUgCGCc -3'
miRNA:   3'- aCGCGGU----AUG-CGA-GAC-AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 112200 0.67 0.928236
Target:  5'- gUGCGCCAcGCaGCUC-GUCGaC-CCGUa -3'
miRNA:   3'- -ACGCGGUaUG-CGAGaCAGCaGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 112324 0.68 0.922469
Target:  5'- aGCGCCAUcgACGCcuuggcgCUGUacagcagCGUgUCCGUg -3'
miRNA:   3'- aCGCGGUA--UGCGa------GACA-------GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 112884 0.68 0.923005
Target:  5'- --gGCCcgGCGUUCUcGUCGgUCgCCGCg -3'
miRNA:   3'- acgCGGuaUGCGAGA-CAGC-AGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 113033 0.66 0.96836
Target:  5'- gGCGCCGcACGCguggUUGuUCGUCacggCCGg -3'
miRNA:   3'- aCGCGGUaUGCGa---GAC-AGCAGa---GGCg -5'
8955 5' -55.7 NC_002512.2 + 114326 0.68 0.917548
Target:  5'- aGCGCC--ACGCUCcGcUCGccgaUCCGCa -3'
miRNA:   3'- aCGCGGuaUGCGAGaC-AGCag--AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 116753 0.68 0.893482
Target:  5'- gGCGCCccGCGCg----CGUCUCCGa -3'
miRNA:   3'- aCGCGGuaUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 117734 0.69 0.886917
Target:  5'- aGCGCCGgcuCGCcgUCgaccgccUCGUCUUCGCg -3'
miRNA:   3'- aCGCGGUau-GCG--AGac-----AGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 118163 0.69 0.858571
Target:  5'- gGCGaCCGUGCccgccggaGaCUCcGUCGUCaUCCGCg -3'
miRNA:   3'- aCGC-GGUAUG--------C-GAGaCAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 121729 0.67 0.938018
Target:  5'- gGCGCCGgcgACGC-CggaggaGUCGgagUCUUCGCg -3'
miRNA:   3'- aCGCGGUa--UGCGaGa-----CAGC---AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 122093 0.72 0.737887
Target:  5'- cGCGCCGgACGCgaggucggcgCUGaCGUCggCCGCg -3'
miRNA:   3'- aCGCGGUaUGCGa---------GACaGCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 124646 0.66 0.96836
Target:  5'- gUGCGCgGcgcgGCGCUCacgcUGUaCGcCUUCGCg -3'
miRNA:   3'- -ACGCGgUa---UGCGAG----ACA-GCaGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.