miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 192276 0.7 0.843214
Target:  5'- cGUGCUcgggACGCUCUgcGUCGUCaUCCuGCu -3'
miRNA:   3'- aCGCGGua--UGCGAGA--CAGCAG-AGG-CG- -5'
8955 5' -55.7 NC_002512.2 + 191649 0.66 0.96836
Target:  5'- cUGuCGCCuuucuguCGCgagGcCGUCUCCGCu -3'
miRNA:   3'- -AC-GCGGuau----GCGagaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 189787 0.75 0.590221
Target:  5'- -cCGCCGUACgagGCUCUGUC-UCUCCGa -3'
miRNA:   3'- acGCGGUAUG---CGAGACAGcAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 189063 0.74 0.639924
Target:  5'- aGCgGCCGgcgGCGCUCUcgacGgcgaGUCUCCGCg -3'
miRNA:   3'- aCG-CGGUa--UGCGAGA----Cag--CAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 187459 0.67 0.942572
Target:  5'- gGCGgcCCGUGugagucCGCUCUGuaguuuUCGUCgUCCGCc -3'
miRNA:   3'- aCGC--GGUAU------GCGAGAC------AGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 184402 0.67 0.938018
Target:  5'- cGcCGCCGggggGCGCUCgGcCuUCUCCGUc -3'
miRNA:   3'- aC-GCGGUa---UGCGAGaCaGcAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 183899 0.67 0.948573
Target:  5'- -uUGCCAUaugGCGCUCUuUCGUCcaugaaccacaccgCCGCg -3'
miRNA:   3'- acGCGGUA---UGCGAGAcAGCAGa-------------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 182633 0.67 0.938018
Target:  5'- cGCGCgAUcuucuccaGCGC-CUG-CGUCUCgGCc -3'
miRNA:   3'- aCGCGgUA--------UGCGaGACaGCAGAGgCG- -5'
8955 5' -55.7 NC_002512.2 + 181388 0.66 0.96836
Target:  5'- cGuCGUCGUGCGCcCUGgc--CUCCGCc -3'
miRNA:   3'- aC-GCGGUAUGCGaGACagcaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177923 0.68 0.89983
Target:  5'- aGCGUCucguCGCUCgg-CGgCUCCGCg -3'
miRNA:   3'- aCGCGGuau-GCGAGacaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177575 0.66 0.951012
Target:  5'- cGuCGCCAggaUGCGCgccagCGUCUCCGg -3'
miRNA:   3'- aC-GCGGU---AUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 177240 0.71 0.80177
Target:  5'- aGCGCC---CGCUCcGUCGcCUCCaGCu -3'
miRNA:   3'- aCGCGGuauGCGAGaCAGCaGAGG-CG- -5'
8955 5' -55.7 NC_002512.2 + 177128 0.81 0.299111
Target:  5'- gUGCGCCAgcagggcccgcGCGUUCUGcugcagCGUCUCCGCg -3'
miRNA:   3'- -ACGCGGUa----------UGCGAGACa-----GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177083 0.69 0.858571
Target:  5'- cGCGuCCGUcaGCccccgCUG-CGUCUCCGCg -3'
miRNA:   3'- aCGC-GGUAugCGa----GACaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 176940 0.71 0.785017
Target:  5'- cGCGCCG-ACGCcgacucguucuggaUGUCGUC-CCGCa -3'
miRNA:   3'- aCGCGGUaUGCGag------------ACAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 176442 0.68 0.89983
Target:  5'- cUGCGCC--GCGgUCggggUGUCGggUUCCGCg -3'
miRNA:   3'- -ACGCGGuaUGCgAG----ACAGCa-GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 172822 0.66 0.962379
Target:  5'- gUGCGCCuacCGUUCgcccggcgccccccgGUCGUCggacgcggccUCCGCu -3'
miRNA:   3'- -ACGCGGuauGCGAGa--------------CAGCAG----------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 170501 0.72 0.747342
Target:  5'- aGCGCC--ACGCacaUGUCGcgcaUCUCCGCc -3'
miRNA:   3'- aCGCGGuaUGCGag-ACAGC----AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 167515 0.72 0.736936
Target:  5'- gGCGCCAUGCgGCUCuccgagaUGUCGUUcgaagagCUGCg -3'
miRNA:   3'- aCGCGGUAUG-CGAG-------ACAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 159020 0.66 0.962044
Target:  5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3'
miRNA:   3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.