miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 226401 0.66 0.965303
Target:  5'- gGCGCCGggacccguCGCgUCcG-CGUCUCCGg -3'
miRNA:   3'- aCGCGGUau------GCG-AGaCaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 224944 0.66 0.954903
Target:  5'- cGUGCCGguguCGCUCggcuccGcCGUCUacCCGCu -3'
miRNA:   3'- aCGCGGUau--GCGAGa-----CaGCAGA--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 222445 0.66 0.96836
Target:  5'- aGCGUCgcGUGCGCcguUCUcGUCGUucgacgauggaCUCCGUg -3'
miRNA:   3'- aCGCGG--UAUGCG---AGA-CAGCA-----------GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 221447 0.67 0.928235
Target:  5'- cGCgGCCGggGCGCg--GUCGUCcgaccggCCGCg -3'
miRNA:   3'- aCG-CGGUa-UGCGagaCAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 220165 0.69 0.886917
Target:  5'- gGCGUCG--UGCUCUG-CGUCgggaggagguUCCGCg -3'
miRNA:   3'- aCGCGGUauGCGAGACaGCAG----------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 219290 0.66 0.965303
Target:  5'- cGaCGCCGUGgccCGCU---UCGUCgUCCGCg -3'
miRNA:   3'- aC-GCGGUAU---GCGAgacAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 219026 0.67 0.93324
Target:  5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3'
miRNA:   3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 218809 0.68 0.89983
Target:  5'- -cCGCCGUcCGCUCcGUCucgccCUCCGCg -3'
miRNA:   3'- acGCGGUAuGCGAGaCAGca---GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 217153 0.73 0.658821
Target:  5'- uUGCGCCGcAgGCUCUccaucGUCGUCggguucaucgcccUCCGCg -3'
miRNA:   3'- -ACGCGGUaUgCGAGA-----CAGCAG-------------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 216371 0.69 0.858571
Target:  5'- gUGCGCCGcagcaGCUucCUGgccgcCGUCUCCGUg -3'
miRNA:   3'- -ACGCGGUaug--CGA--GACa----GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 215490 0.66 0.951012
Target:  5'- gGCGCC---UGCUCUacuUCGcCUCCGUg -3'
miRNA:   3'- aCGCGGuauGCGAGAc--AGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 215350 0.66 0.962044
Target:  5'- cGUGCCcg--GCUCcGUCGaCUCCGUc -3'
miRNA:   3'- aCGCGGuaugCGAGaCAGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 213409 1.11 0.00386
Target:  5'- cUGCGCCAUACGCUCUGUCGUCUCCGCc -3'
miRNA:   3'- -ACGCGGUAUGCGAGACAGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 206591 0.69 0.865961
Target:  5'- gGUGCCGUACGC---GUUGUC-CUGCg -3'
miRNA:   3'- aCGCGGUAUGCGagaCAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 202299 0.69 0.865961
Target:  5'- gGCGCCGUgccgccGCGCUUuuggGcCG-CUCCGCc -3'
miRNA:   3'- aCGCGGUA------UGCGAGa---CaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 200122 0.66 0.951012
Target:  5'- aGCGCCAcaucACcaaCUCUGUCGUCUaCGa -3'
miRNA:   3'- aCGCGGUa---UGc--GAGACAGCAGAgGCg -5'
8955 5' -55.7 NC_002512.2 + 199201 0.67 0.93324
Target:  5'- --gGUCGUACGggUUGUCGUCcgaCCGCg -3'
miRNA:   3'- acgCGGUAUGCgaGACAGCAGa--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 196690 0.67 0.946902
Target:  5'- cGCGCCcaucggGCGC-CUGuUCGgUUCCGUg -3'
miRNA:   3'- aCGCGGua----UGCGaGAC-AGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 196338 0.7 0.843214
Target:  5'- gUGCGUCAcaaACGCUauaaaggGUCGgaggCUCCGCc -3'
miRNA:   3'- -ACGCGGUa--UGCGAga-----CAGCa---GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 192894 0.66 0.958579
Target:  5'- aGCGCCGUcGCGCUCcgcggcgGUCcagagCCGCc -3'
miRNA:   3'- aCGCGGUA-UGCGAGa------CAGcaga-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.