miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 112884 0.68 0.923005
Target:  5'- --gGCCcgGCGUUCUcGUCGgUCgCCGCg -3'
miRNA:   3'- acgCGGuaUGCGAGA-CAGC-AGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 117734 0.69 0.886917
Target:  5'- aGCGCCGgcuCGCcgUCgaccgccUCGUCUUCGCg -3'
miRNA:   3'- aCGCGGUau-GCG--AGac-----AGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 116753 0.68 0.893482
Target:  5'- gGCGCCccGCGCg----CGUCUCCGa -3'
miRNA:   3'- aCGCGGuaUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 93636 0.68 0.905959
Target:  5'- cGUGCuCGgugGCGUUgUGUcCGUCUCUGUg -3'
miRNA:   3'- aCGCG-GUa--UGCGAgACA-GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 101399 0.68 0.917548
Target:  5'- gGCGCUGUcCGCcgaccgCUGUCG-CUgCCGCu -3'
miRNA:   3'- aCGCGGUAuGCGa-----GACAGCaGA-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 114326 0.68 0.917548
Target:  5'- aGCGCC--ACGCUCcGcUCGccgaUCCGCa -3'
miRNA:   3'- aCGCGGuaUGCGAGaC-AGCag--AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 137752 0.68 0.917548
Target:  5'- cGCGCCGcaGCGCcCgcagCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa-UGCGaGaca-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 112324 0.68 0.922469
Target:  5'- aGCGCCAUcgACGCcuuggcgCUGUacagcagCGUgUCCGUg -3'
miRNA:   3'- aCGCGGUA--UGCGa------GACA-------GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 1970 0.68 0.923005
Target:  5'- gGCGUCGgaggcgGCGCguc--CGUCUCCGCc -3'
miRNA:   3'- aCGCGGUa-----UGCGagacaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96059 0.69 0.886917
Target:  5'- aGCGCCggcgGUACGaCUCgGcCGUCUCgGUc -3'
miRNA:   3'- aCGCGG----UAUGC-GAGaCaGCAGAGgCG- -5'
8955 5' -55.7 NC_002512.2 + 2128 0.69 0.880139
Target:  5'- gGCGUCGaGCGUUCgGUCGUCgccucccCCGUc -3'
miRNA:   3'- aCGCGGUaUGCGAGaCAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 129992 0.69 0.858571
Target:  5'- aGCGCCGgcgGCGCcgCgUGccCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa--UGCGa-G-ACa-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 24362 0.75 0.541229
Target:  5'- cUGcCGCUguAUGCGCUCgaagucGUCGUCcUCCGCg -3'
miRNA:   3'- -AC-GCGG--UAUGCGAGa-----CAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 129320 0.73 0.658821
Target:  5'- aGCGCCcgGCGCuUCUG-CGUCacggaccUCUGCg -3'
miRNA:   3'- aCGCGGuaUGCG-AGACaGCAG-------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 67746 0.71 0.7751
Target:  5'- cGUGCCGgccuCGCgagCcgggGUCGUCUCCGg -3'
miRNA:   3'- aCGCGGUau--GCGa--Ga---CAGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 137218 0.71 0.7751
Target:  5'- cGCGCCcgGCGCgggCgGcCGUCccggaUCCGCg -3'
miRNA:   3'- aCGCGGuaUGCGa--GaCaGCAG-----AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 99279 0.71 0.784122
Target:  5'- cGCGCCGg--GCUCU-UCGUCUCCu- -3'
miRNA:   3'- aCGCGGUaugCGAGAcAGCAGAGGcg -5'
8955 5' -55.7 NC_002512.2 + 139969 0.71 0.793015
Target:  5'- cGCGCCAUGC-C-CUGcaUCGUCUgCGUg -3'
miRNA:   3'- aCGCGGUAUGcGaGAC--AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 36290 0.7 0.81038
Target:  5'- cGCGUCA---GCUCcccUGUCGUCcCCGCg -3'
miRNA:   3'- aCGCGGUaugCGAG---ACAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 118163 0.69 0.858571
Target:  5'- gGCGaCCGUGCccgccggaGaCUCcGUCGUCaUCCGCg -3'
miRNA:   3'- aCGC-GGUAUG--------C-GAGaCAGCAG-AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.