miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 181388 0.66 0.96836
Target:  5'- cGuCGUCGUGCGCcCUGgc--CUCCGCc -3'
miRNA:   3'- aC-GCGGUAUGCGaGACagcaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 143224 0.67 0.938018
Target:  5'- cGCGCCGUcCGCUCggacgCGgccaCCGCg -3'
miRNA:   3'- aCGCGGUAuGCGAGaca--GCaga-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 199201 0.67 0.93324
Target:  5'- --gGUCGUACGggUUGUCGUCcgaCCGCg -3'
miRNA:   3'- acgCGGUAUGCgaGACAGCAGa--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 213409 1.11 0.00386
Target:  5'- cUGCGCCAUACGCUCUGUCGUCUCCGCc -3'
miRNA:   3'- -ACGCGGUAUGCGAGACAGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 172822 0.66 0.962379
Target:  5'- gUGCGCCuacCGUUCgcccggcgccccccgGUCGUCggacgcggccUCCGCu -3'
miRNA:   3'- -ACGCGGuauGCGAGa--------------CAGCAG----------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 215350 0.66 0.962044
Target:  5'- cGUGCCcg--GCUCcGUCGaCUCCGUc -3'
miRNA:   3'- aCGCGGuaugCGAGaCAGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 192894 0.66 0.958579
Target:  5'- aGCGCCGUcGCGCUCcgcggcgGUCcagagCCGCc -3'
miRNA:   3'- aCGCGGUA-UGCGAGa------CAGcaga-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 126556 0.66 0.958579
Target:  5'- cGaCGCCcccACGCUCgGUCGUCcUgGCg -3'
miRNA:   3'- aC-GCGGua-UGCGAGaCAGCAGaGgCG- -5'
8955 5' -55.7 NC_002512.2 + 177575 0.66 0.951012
Target:  5'- cGuCGCCAggaUGCGCgccagCGUCUCCGg -3'
miRNA:   3'- aC-GCGGU---AUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 148851 0.67 0.938018
Target:  5'- cGCuGCCGgaACGCcggCUGcCGcCUCCGCc -3'
miRNA:   3'- aCG-CGGUa-UGCGa--GACaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 187459 0.67 0.942572
Target:  5'- gGCGgcCCGUGugagucCGCUCUGuaguuuUCGUCgUCCGCc -3'
miRNA:   3'- aCGC--GGUAU------GCGAGAC------AGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 215490 0.66 0.951012
Target:  5'- gGCGCC---UGCUCUacuUCGcCUCCGUg -3'
miRNA:   3'- aCGCGGuauGCGAGAc--AGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96085 0.66 0.96836
Target:  5'- cGCaCCcgGCGCgaccGUCGUCcCCGCc -3'
miRNA:   3'- aCGcGGuaUGCGaga-CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 184402 0.67 0.938018
Target:  5'- cGcCGCCGggggGCGCUCgGcCuUCUCCGUc -3'
miRNA:   3'- aC-GCGGUa---UGCGAGaCaGcAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 226401 0.66 0.965303
Target:  5'- gGCGCCGggacccguCGCgUCcG-CGUCUCCGg -3'
miRNA:   3'- aCGCGGUau------GCG-AGaCaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 224944 0.66 0.954903
Target:  5'- cGUGCCGguguCGCUCggcuccGcCGUCUacCCGCu -3'
miRNA:   3'- aCGCGGUau--GCGAGa-----CaGCAGA--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 182633 0.67 0.938018
Target:  5'- cGCGCgAUcuucuccaGCGC-CUG-CGUCUCgGCc -3'
miRNA:   3'- aCGCGgUA--------UGCGaGACaGCAGAGgCG- -5'
8955 5' -55.7 NC_002512.2 + 219026 0.67 0.93324
Target:  5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3'
miRNA:   3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 219290 0.66 0.965303
Target:  5'- cGaCGCCGUGgccCGCU---UCGUCgUCCGCg -3'
miRNA:   3'- aC-GCGGUAU---GCGAgacAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 159020 0.66 0.962044
Target:  5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3'
miRNA:   3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.