miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 5685 0.7 0.818837
Target:  5'- cGUcCUAUGCGCUCgcaucGUCGUUucguUCCGCg -3'
miRNA:   3'- aCGcGGUAUGCGAGa----CAGCAG----AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 192276 0.7 0.843214
Target:  5'- cGUGCUcgggACGCUCUgcGUCGUCaUCCuGCu -3'
miRNA:   3'- aCGCGGua--UGCGAGA--CAGCAG-AGG-CG- -5'
8955 5' -55.7 NC_002512.2 + 196338 0.7 0.843214
Target:  5'- gUGCGUCAcaaACGCUauaaaggGUCGgaggCUCCGCc -3'
miRNA:   3'- -ACGCGGUa--UGCGAga-----CAGCa---GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 216371 0.69 0.858571
Target:  5'- gUGCGCCGcagcaGCUucCUGgccgcCGUCUCCGUg -3'
miRNA:   3'- -ACGCGGUaug--CGA--GACa----GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 129992 0.69 0.858571
Target:  5'- aGCGCCGgcgGCGCcgCgUGccCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa--UGCGa-G-ACa-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 118163 0.69 0.858571
Target:  5'- gGCGaCCGUGCccgccggaGaCUCcGUCGUCaUCCGCg -3'
miRNA:   3'- aCGC-GGUAUG--------C-GAGaCAGCAG-AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177083 0.69 0.858571
Target:  5'- cGCGuCCGUcaGCccccgCUG-CGUCUCCGCg -3'
miRNA:   3'- aCGC-GGUAugCGa----GACaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 132733 0.69 0.865961
Target:  5'- cGUGCCGcagGCGCagcgCggcGUCGUC-CCGCa -3'
miRNA:   3'- aCGCGGUa--UGCGa---Ga--CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 202299 0.69 0.865961
Target:  5'- gGCGCCGUgccgccGCGCUUuuggGcCG-CUCCGCc -3'
miRNA:   3'- aCGCGGUA------UGCGAGa---CaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 206591 0.69 0.865961
Target:  5'- gGUGCCGUACGC---GUUGUC-CUGCg -3'
miRNA:   3'- aCGCGGUAUGCGagaCAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 131212 0.69 0.873152
Target:  5'- cGCgGCCAgGCGCUCgacGUCGcggUCggaggCCGCg -3'
miRNA:   3'- aCG-CGGUaUGCGAGa--CAGC---AGa----GGCG- -5'
8955 5' -55.7 NC_002512.2 + 100578 0.69 0.873152
Target:  5'- aGCGCCGgGCGCUCggGUgGggaaaCCGCg -3'
miRNA:   3'- aCGCGGUaUGCGAGa-CAgCaga--GGCG- -5'
8955 5' -55.7 NC_002512.2 + 98122 0.69 0.880139
Target:  5'- cGCuuGCCGggGCGCUg-GUCGUCgcggCCGCc -3'
miRNA:   3'- aCG--CGGUa-UGCGAgaCAGCAGa---GGCG- -5'
8955 5' -55.7 NC_002512.2 + 158517 0.69 0.880139
Target:  5'- cUGCGCCA-GCGCUCccUGcUCGUCacCCGg -3'
miRNA:   3'- -ACGCGGUaUGCGAG--AC-AGCAGa-GGCg -5'
8955 5' -55.7 NC_002512.2 + 2128 0.69 0.880139
Target:  5'- gGCGUCGaGCGUUCgGUCGUCgccucccCCGUc -3'
miRNA:   3'- aCGCGGUaUGCGAGaCAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 117734 0.69 0.886917
Target:  5'- aGCGCCGgcuCGCcgUCgaccgccUCGUCUUCGCg -3'
miRNA:   3'- aCGCGGUau-GCG--AGac-----AGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 96059 0.69 0.886917
Target:  5'- aGCGCCggcgGUACGaCUCgGcCGUCUCgGUc -3'
miRNA:   3'- aCGCGG----UAUGC-GAGaCaGCAGAGgCG- -5'
8955 5' -55.7 NC_002512.2 + 220165 0.69 0.886917
Target:  5'- gGCGUCG--UGCUCUG-CGUCgggaggagguUCCGCg -3'
miRNA:   3'- aCGCGGUauGCGAGACaGCAG----------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 116753 0.68 0.893482
Target:  5'- gGCGCCccGCGCg----CGUCUCCGa -3'
miRNA:   3'- aCGCGGuaUGCGagacaGCAGAGGCg -5'
8955 5' -55.7 NC_002512.2 + 176442 0.68 0.89983
Target:  5'- cUGCGCC--GCGgUCggggUGUCGggUUCCGCg -3'
miRNA:   3'- -ACGCGGuaUGCgAG----ACAGCa-GAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.