Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 5' | -55.7 | NC_002512.2 | + | 218809 | 0.68 | 0.89983 |
Target: 5'- -cCGCCGUcCGCUCcGUCucgccCUCCGCg -3' miRNA: 3'- acGCGGUAuGCGAGaCAGca---GAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 176442 | 0.68 | 0.89983 |
Target: 5'- cUGCGCC--GCGgUCggggUGUCGggUUCCGCg -3' miRNA: 3'- -ACGCGGuaUGCgAG----ACAGCa-GAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 93636 | 0.68 | 0.905959 |
Target: 5'- cGUGCuCGgugGCGUUgUGUcCGUCUCUGUg -3' miRNA: 3'- aCGCG-GUa--UGCGAgACA-GCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 137752 | 0.68 | 0.917548 |
Target: 5'- cGCGCCGcaGCGCcCgcagCGUgUCCGCg -3' miRNA: 3'- aCGCGGUa-UGCGaGaca-GCAgAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 140358 | 0.68 | 0.917548 |
Target: 5'- aGCGCCGUcaccgaACaCUCgaacaccgaCGUCUCCGCg -3' miRNA: 3'- aCGCGGUA------UGcGAGaca------GCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 101399 | 0.68 | 0.917548 |
Target: 5'- gGCGCUGUcCGCcgaccgCUGUCG-CUgCCGCu -3' miRNA: 3'- aCGCGGUAuGCGa-----GACAGCaGA-GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 114326 | 0.68 | 0.917548 |
Target: 5'- aGCGCC--ACGCUCcGcUCGccgaUCCGCa -3' miRNA: 3'- aCGCGGuaUGCGAGaC-AGCag--AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 112324 | 0.68 | 0.922469 |
Target: 5'- aGCGCCAUcgACGCcuuggcgCUGUacagcagCGUgUCCGUg -3' miRNA: 3'- aCGCGGUA--UGCGa------GACA-------GCAgAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 3698 | 0.68 | 0.923005 |
Target: 5'- cGCGCUAacgGCGCg--GcCGUCUCUGUc -3' miRNA: 3'- aCGCGGUa--UGCGagaCaGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 1970 | 0.68 | 0.923005 |
Target: 5'- gGCGUCGgaggcgGCGCguc--CGUCUCCGCc -3' miRNA: 3'- aCGCGGUa-----UGCGagacaGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 112884 | 0.68 | 0.923005 |
Target: 5'- --gGCCcgGCGUUCUcGUCGgUCgCCGCg -3' miRNA: 3'- acgCGGuaUGCGAGA-CAGC-AGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 39994 | 0.68 | 0.923005 |
Target: 5'- cGcCGCCGUccuCGCcgCcGcCGUCUCCGCc -3' miRNA: 3'- aC-GCGGUAu--GCGa-GaCaGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 126833 | 0.68 | 0.923005 |
Target: 5'- -cCGUCGUcGCGCUCgucgcgGUCGUCgCCGUc -3' miRNA: 3'- acGCGGUA-UGCGAGa-----CAGCAGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 137326 | 0.68 | 0.923005 |
Target: 5'- gGCGUCG-GCGcCUCcgacGUCGUCgCCGCg -3' miRNA: 3'- aCGCGGUaUGC-GAGa---CAGCAGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 221447 | 0.67 | 0.928235 |
Target: 5'- cGCgGCCGggGCGCg--GUCGUCcgaccggCCGCg -3' miRNA: 3'- aCG-CGGUa-UGCGagaCAGCAGa------GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 145663 | 0.67 | 0.928235 |
Target: 5'- cGCGCU---CGCUCU-UCGUCugccugUCCGCg -3' miRNA: 3'- aCGCGGuauGCGAGAcAGCAG------AGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 1153 | 0.67 | 0.928235 |
Target: 5'- -cCGCCGUcCGCguc--CGUCUCCGCa -3' miRNA: 3'- acGCGGUAuGCGagacaGCAGAGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 112200 | 0.67 | 0.928236 |
Target: 5'- gUGCGCCAcGCaGCUC-GUCGaC-CCGUa -3' miRNA: 3'- -ACGCGGUaUG-CGAGaCAGCaGaGGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 199201 | 0.67 | 0.93324 |
Target: 5'- --gGUCGUACGggUUGUCGUCcgaCCGCg -3' miRNA: 3'- acgCGGUAUGCgaGACAGCAGa--GGCG- -5' |
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8955 | 5' | -55.7 | NC_002512.2 | + | 219026 | 0.67 | 0.93324 |
Target: 5'- cUGCGaCGUGCuGgUCUacGUCGUCggCCGCg -3' miRNA: 3'- -ACGCgGUAUG-CgAGA--CAGCAGa-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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