miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 126556 0.66 0.958579
Target:  5'- cGaCGCCcccACGCUCgGUCGUCcUgGCg -3'
miRNA:   3'- aC-GCGGua-UGCGAGaCAGCAGaGgCG- -5'
8955 5' -55.7 NC_002512.2 + 126833 0.68 0.923005
Target:  5'- -cCGUCGUcGCGCUCgucgcgGUCGUCgCCGUc -3'
miRNA:   3'- acGCGGUA-UGCGAGa-----CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 127948 0.67 0.942572
Target:  5'- gGCcCCGUuCGCUCUccGUCGgUCcCCGCa -3'
miRNA:   3'- aCGcGGUAuGCGAGA--CAGC-AGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 129320 0.73 0.658821
Target:  5'- aGCGCCcgGCGCuUCUG-CGUCacggaccUCUGCg -3'
miRNA:   3'- aCGCGGuaUGCG-AGACaGCAG-------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 129992 0.69 0.858571
Target:  5'- aGCGCCGgcgGCGCcgCgUGccCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa--UGCGa-G-ACa-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 131212 0.69 0.873152
Target:  5'- cGCgGCCAgGCGCUCgacGUCGcggUCggaggCCGCg -3'
miRNA:   3'- aCG-CGGUaUGCGAGa--CAGC---AGa----GGCG- -5'
8955 5' -55.7 NC_002512.2 + 132018 0.66 0.950611
Target:  5'- cGCGUCGgcggGCGgguccguCUCgGUCGUCgccUCCGCu -3'
miRNA:   3'- aCGCGGUa---UGC-------GAGaCAGCAG---AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 132733 0.69 0.865961
Target:  5'- cGUGCCGcagGCGCagcgCggcGUCGUC-CCGCa -3'
miRNA:   3'- aCGCGGUa--UGCGa---Ga--CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 135342 0.66 0.951012
Target:  5'- cGCGCCGgggUGCUgCUGgcCGUCgaCCGCu -3'
miRNA:   3'- aCGCGGUau-GCGA-GACa-GCAGa-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 137218 0.71 0.7751
Target:  5'- cGCGCCcgGCGCgggCgGcCGUCccggaUCCGCg -3'
miRNA:   3'- aCGCGGuaUGCGa--GaCaGCAG-----AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 137326 0.68 0.923005
Target:  5'- gGCGUCG-GCGcCUCcgacGUCGUCgCCGCg -3'
miRNA:   3'- aCGCGGUaUGC-GAGa---CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 137752 0.68 0.917548
Target:  5'- cGCGCCGcaGCGCcCgcagCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa-UGCGaGaca-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 139969 0.71 0.793015
Target:  5'- cGCGCCAUGC-C-CUGcaUCGUCUgCGUg -3'
miRNA:   3'- aCGCGGUAUGcGaGAC--AGCAGAgGCG- -5'
8955 5' -55.7 NC_002512.2 + 140358 0.68 0.917548
Target:  5'- aGCGCCGUcaccgaACaCUCgaacaccgaCGUCUCCGCg -3'
miRNA:   3'- aCGCGGUA------UGcGAGaca------GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 143224 0.67 0.938018
Target:  5'- cGCGCCGUcCGCUCggacgCGgccaCCGCg -3'
miRNA:   3'- aCGCGGUAuGCGAGaca--GCaga-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 145663 0.67 0.928235
Target:  5'- cGCGCU---CGCUCU-UCGUCugccugUCCGCg -3'
miRNA:   3'- aCGCGGuauGCGAGAcAGCAG------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 148851 0.67 0.938018
Target:  5'- cGCuGCCGgaACGCcggCUGcCGcCUCCGCc -3'
miRNA:   3'- aCG-CGGUa-UGCGa--GACaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 158517 0.69 0.880139
Target:  5'- cUGCGCCA-GCGCUCccUGcUCGUCacCCGg -3'
miRNA:   3'- -ACGCGGUaUGCGAG--AC-AGCAGa-GGCg -5'
8955 5' -55.7 NC_002512.2 + 159020 0.66 0.962044
Target:  5'- cGCGCCGgGCGgaCcGaCGacuUCUCCGCg -3'
miRNA:   3'- aCGCGGUaUGCgaGaCaGC---AGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 167515 0.72 0.736936
Target:  5'- gGCGCCAUGCgGCUCuccgagaUGUCGUUcgaagagCUGCg -3'
miRNA:   3'- aCGCGGUAUG-CGAG-------ACAGCAGa------GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.