miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 5' -55.7 NC_002512.2 + 112200 0.67 0.928236
Target:  5'- gUGCGCCAcGCaGCUC-GUCGaC-CCGUa -3'
miRNA:   3'- -ACGCGGUaUG-CGAGaCAGCaGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 145663 0.67 0.928235
Target:  5'- cGCGCU---CGCUCU-UCGUCugccugUCCGCg -3'
miRNA:   3'- aCGCGGuauGCGAGAcAGCAG------AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 1153 0.67 0.928235
Target:  5'- -cCGCCGUcCGCguc--CGUCUCCGCa -3'
miRNA:   3'- acGCGGUAuGCGagacaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 221447 0.67 0.928235
Target:  5'- cGCgGCCGggGCGCg--GUCGUCcgaccggCCGCg -3'
miRNA:   3'- aCG-CGGUa-UGCGagaCAGCAGa------GGCG- -5'
8955 5' -55.7 NC_002512.2 + 137326 0.68 0.923005
Target:  5'- gGCGUCG-GCGcCUCcgacGUCGUCgCCGCg -3'
miRNA:   3'- aCGCGGUaUGC-GAGa---CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 112884 0.68 0.923005
Target:  5'- --gGCCcgGCGUUCUcGUCGgUCgCCGCg -3'
miRNA:   3'- acgCGGuaUGCGAGA-CAGC-AGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 3698 0.68 0.923005
Target:  5'- cGCGCUAacgGCGCg--GcCGUCUCUGUc -3'
miRNA:   3'- aCGCGGUa--UGCGagaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 39994 0.68 0.923005
Target:  5'- cGcCGCCGUccuCGCcgCcGcCGUCUCCGCc -3'
miRNA:   3'- aC-GCGGUAu--GCGa-GaCaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 126833 0.68 0.923005
Target:  5'- -cCGUCGUcGCGCUCgucgcgGUCGUCgCCGUc -3'
miRNA:   3'- acGCGGUA-UGCGAGa-----CAGCAGaGGCG- -5'
8955 5' -55.7 NC_002512.2 + 1970 0.68 0.923005
Target:  5'- gGCGUCGgaggcgGCGCguc--CGUCUCCGCc -3'
miRNA:   3'- aCGCGGUa-----UGCGagacaGCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 112324 0.68 0.922469
Target:  5'- aGCGCCAUcgACGCcuuggcgCUGUacagcagCGUgUCCGUg -3'
miRNA:   3'- aCGCGGUA--UGCGa------GACA-------GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 140358 0.68 0.917548
Target:  5'- aGCGCCGUcaccgaACaCUCgaacaccgaCGUCUCCGCg -3'
miRNA:   3'- aCGCGGUA------UGcGAGaca------GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 137752 0.68 0.917548
Target:  5'- cGCGCCGcaGCGCcCgcagCGUgUCCGCg -3'
miRNA:   3'- aCGCGGUa-UGCGaGaca-GCAgAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 114326 0.68 0.917548
Target:  5'- aGCGCC--ACGCUCcGcUCGccgaUCCGCa -3'
miRNA:   3'- aCGCGGuaUGCGAGaC-AGCag--AGGCG- -5'
8955 5' -55.7 NC_002512.2 + 101399 0.68 0.917548
Target:  5'- gGCGCUGUcCGCcgaccgCUGUCG-CUgCCGCu -3'
miRNA:   3'- aCGCGGUAuGCGa-----GACAGCaGA-GGCG- -5'
8955 5' -55.7 NC_002512.2 + 93636 0.68 0.905959
Target:  5'- cGUGCuCGgugGCGUUgUGUcCGUCUCUGUg -3'
miRNA:   3'- aCGCG-GUa--UGCGAgACA-GCAGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 176442 0.68 0.89983
Target:  5'- cUGCGCC--GCGgUCggggUGUCGggUUCCGCg -3'
miRNA:   3'- -ACGCGGuaUGCgAG----ACAGCa-GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 218809 0.68 0.89983
Target:  5'- -cCGCCGUcCGCUCcGUCucgccCUCCGCg -3'
miRNA:   3'- acGCGGUAuGCGAGaCAGca---GAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 177923 0.68 0.89983
Target:  5'- aGCGUCucguCGCUCgg-CGgCUCCGCg -3'
miRNA:   3'- aCGCGGuau-GCGAGacaGCaGAGGCG- -5'
8955 5' -55.7 NC_002512.2 + 116753 0.68 0.893482
Target:  5'- gGCGCCccGCGCg----CGUCUCCGa -3'
miRNA:   3'- aCGCGGuaUGCGagacaGCAGAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.