miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 213113 1.08 0.002945
Target:  5'- cACCAUCCUCACCCCGCGCGACUACCAg -3'
miRNA:   3'- -UGGUAGGAGUGGGGCGCGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 94073 0.77 0.317559
Target:  5'- gACCcUCCUCcCCCCGCGaCGGCggcgGCCGg -3'
miRNA:   3'- -UGGuAGGAGuGGGGCGC-GCUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 120722 0.76 0.346191
Target:  5'- uUCAUCCcgGCCCCGCGCGagaacgugaGCUGCCAg -3'
miRNA:   3'- uGGUAGGagUGGGGCGCGC---------UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 62143 0.76 0.36885
Target:  5'- cGCCGacgcccggcagcUCCUCGCCCCGCuCGACgagagACCGg -3'
miRNA:   3'- -UGGU------------AGGAGUGGGGCGcGCUGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 95604 0.75 0.408813
Target:  5'- gACgAUCCUCcgggACCCCGCGCgGACgacgaagGCCAg -3'
miRNA:   3'- -UGgUAGGAG----UGGGGCGCG-CUGa------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 98847 0.75 0.408813
Target:  5'- cGCCGUCCUC-CCCCGCGgcccCGAC-GCCc -3'
miRNA:   3'- -UGGUAGGAGuGGGGCGC----GCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 39997 0.75 0.417124
Target:  5'- cGCCGUCCUCGCCgCCGC-CGuCUccGCCGu -3'
miRNA:   3'- -UGGUAGGAGUGG-GGCGcGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 27742 0.74 0.425537
Target:  5'- gACCA-CC-CGCCCCGCGgCGGCgGCCGa -3'
miRNA:   3'- -UGGUaGGaGUGGGGCGC-GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 183520 0.74 0.46017
Target:  5'- gGCCGUCCUCGCCUgGCuGCGG--ACCGg -3'
miRNA:   3'- -UGGUAGGAGUGGGgCG-CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 28159 0.74 0.469061
Target:  5'- aGCCGUCgUCuccCCCCGCGaCGACgacGCCGc -3'
miRNA:   3'- -UGGUAGgAGu--GGGGCGC-GCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 124092 0.74 0.469061
Target:  5'- cGCCGUCUUCGCCCuCGCcGuCGACcaUGCCGa -3'
miRNA:   3'- -UGGUAGGAGUGGG-GCG-C-GCUG--AUGGU- -5'
8956 3' -58.9 NC_002512.2 + 82409 0.73 0.4871
Target:  5'- cCCGUCCgcaGCgCCCGCGCGAagACCAg -3'
miRNA:   3'- uGGUAGGag-UG-GGGCGCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 70901 0.73 0.50546
Target:  5'- cGCCG-CCUcCGCCCCGcCGUGGCcGCCGa -3'
miRNA:   3'- -UGGUaGGA-GUGGGGC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 208659 0.73 0.524111
Target:  5'- cCCGUCUcCGCCCCGgGCGGCgucCCGg -3'
miRNA:   3'- uGGUAGGaGUGGGGCgCGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 100032 0.72 0.542068
Target:  5'- cGCCGUCCUcCGCCuCCGCcuccgccuccaucGCGACggggGCCGc -3'
miRNA:   3'- -UGGUAGGA-GUGG-GGCG-------------CGCUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 94548 0.72 0.543019
Target:  5'- gGCCAgcagCACCCCgGCGCGGCUgacGCCGa -3'
miRNA:   3'- -UGGUaggaGUGGGG-CGCGCUGA---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 116824 0.72 0.552557
Target:  5'- gACCG-CCUgGCCCuCGUGCGGCU-CCGa -3'
miRNA:   3'- -UGGUaGGAgUGGG-GCGCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 130816 0.72 0.571779
Target:  5'- uUCAUCCUCagccaccccaACCCCGCGguCGAgUACCGg -3'
miRNA:   3'- uGGUAGGAG----------UGGGGCGC--GCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 223493 0.72 0.571779
Target:  5'- cGCCGccUCC-CugCCCGuCGCGACgACCAc -3'
miRNA:   3'- -UGGU--AGGaGugGGGC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 28021 0.72 0.571779
Target:  5'- cGCCGUCCUCggaccgcagGCCCCaG-GCGAgCUGCCGg -3'
miRNA:   3'- -UGGUAGGAG---------UGGGG-CgCGCU-GAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.