miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 416 0.71 0.591155
Target:  5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3'
miRNA:   3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 1822 0.66 0.890089
Target:  5'- cCCGUCgUC-UCCCGCGCcGCaGCCGu -3'
miRNA:   3'- uGGUAGgAGuGGGGCGCGcUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 2982 0.66 0.862671
Target:  5'- gGCC-UCCUUggcCCCCGCGUGGC--CCGg -3'
miRNA:   3'- -UGGuAGGAGu--GGGGCGCGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 3123 0.69 0.707837
Target:  5'- -aCGUCCUCGCCCUcCGCGuCguccgGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGcGCGCuGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 3370 0.7 0.678944
Target:  5'- gACCGUCCgccCGCUCCGCGgGGC--CCAc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGCGCgCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 3425 0.67 0.832224
Target:  5'- gGCC-UCCUCccGCCUCGCGgGGCUGg-- -3'
miRNA:   3'- -UGGuAGGAG--UGGGGCGCgCUGAUggu -5'
8956 3' -58.9 NC_002512.2 + 4855 0.69 0.745504
Target:  5'- gGCCAUCgcggggUUCGCCgCGUGCGGC-GCCGg -3'
miRNA:   3'- -UGGUAG------GAGUGGgGCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 6171 0.68 0.799126
Target:  5'- gUCGUCCU--CCCCGUGCGAgUcGCCGg -3'
miRNA:   3'- uGGUAGGAguGGGGCGCGCUgA-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 7297 0.68 0.781721
Target:  5'- gGCCGgacaggCCUC-CUCCGCGaCGGCggGCCGc -3'
miRNA:   3'- -UGGUa-----GGAGuGGGGCGC-GCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 8616 0.66 0.862671
Target:  5'- cCCcUCCacgCGCCCCGCGUcccccGACUuccGCCGc -3'
miRNA:   3'- uGGuAGGa--GUGGGGCGCG-----CUGA---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 9207 0.69 0.745504
Target:  5'- uCCGUCCcgUCGCCCagcaCGaCGCGGCggGCCAg -3'
miRNA:   3'- uGGUAGG--AGUGGG----GC-GCGCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 9760 0.69 0.717362
Target:  5'- aGCCGgacCCgcCGCCCCGCGUGGCgGCUc -3'
miRNA:   3'- -UGGUa--GGa-GUGGGGCGCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 9951 0.7 0.649734
Target:  5'- uCCAcCCUC-CCCCGCGCgucGACggagACCGa -3'
miRNA:   3'- uGGUaGGAGuGGGGCGCG---CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 10068 0.66 0.85533
Target:  5'- gACCGaCCcccugucgCGCCCCGCGCGucccCUAUCu -3'
miRNA:   3'- -UGGUaGGa-------GUGGGGCGCGCu---GAUGGu -5'
8956 3' -58.9 NC_002512.2 + 10195 0.66 0.876092
Target:  5'- cGCCGacgcuccUCCUCGuCCUCGgGCGGCgcgcCCAg -3'
miRNA:   3'- -UGGU-------AGGAGU-GGGGCgCGCUGau--GGU- -5'
8956 3' -58.9 NC_002512.2 + 20843 0.66 0.876779
Target:  5'- aGCCGUCggaaUCGCUCCGggaCGCGGCcGCCc -3'
miRNA:   3'- -UGGUAGg---AGUGGGGC---GCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 21083 0.66 0.876779
Target:  5'- gGCgGUCC-CGCUCCgGgGCGACcGCCGu -3'
miRNA:   3'- -UGgUAGGaGUGGGG-CgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 21127 0.66 0.876779
Target:  5'- gGCCuuccgCUUCGgcuUCCUGgGCGACUGCCu -3'
miRNA:   3'- -UGGua---GGAGU---GGGGCgCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 22701 0.66 0.862671
Target:  5'- gACCAacgCgUCGCCCCG-GCGgcacaucaacaGCUACCGc -3'
miRNA:   3'- -UGGUa--GgAGUGGGGCgCGC-----------UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 22887 0.66 0.869822
Target:  5'- cACCAUgCUgACCCCGCG-GGCcACgGg -3'
miRNA:   3'- -UGGUAgGAgUGGGGCGCgCUGaUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.