miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 229819 0.71 0.591155
Target:  5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3'
miRNA:   3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 226649 0.67 0.847805
Target:  5'- gACCGUCgUCACCCgaCGCGcCGGgU-CCAg -3'
miRNA:   3'- -UGGUAGgAGUGGG--GCGC-GCUgAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 225449 0.68 0.790488
Target:  5'- cCCGcgCCcggCACCCCGC-CGGuCUACCAg -3'
miRNA:   3'- uGGUa-GGa--GUGGGGCGcGCU-GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 224911 0.7 0.688621
Target:  5'- cGCCGUCUgCACCuCCGuCGCGGggACCGg -3'
miRNA:   3'- -UGGUAGGaGUGG-GGC-GCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 224718 0.69 0.745504
Target:  5'- gGCCggCCgcCGCCCCGguCGCGccGCUGCCGu -3'
miRNA:   3'- -UGGuaGGa-GUGGGGC--GCGC--UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 223493 0.72 0.571779
Target:  5'- cGCCGccUCC-CugCCCGuCGCGACgACCAc -3'
miRNA:   3'- -UGGU--AGGaGugGGGC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 221500 0.66 0.876779
Target:  5'- -gCGUCCUauuuUCCUGCGCGGC-GCCGc -3'
miRNA:   3'- ugGUAGGAgu--GGGGCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 219167 0.66 0.883536
Target:  5'- cGCCGaggaCUUCGCCgCCGU-CGGCUACCGc -3'
miRNA:   3'- -UGGUa---GGAGUGG-GGCGcGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 218827 0.67 0.847805
Target:  5'- cGCCcUCCgcgGCCCUGCucuGCGACUucGCCGa -3'
miRNA:   3'- -UGGuAGGag-UGGGGCG---CGCUGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 213113 1.08 0.002945
Target:  5'- cACCAUCCUCACCCCGCGCGACUACCAg -3'
miRNA:   3'- -UGGUAGGAGUGGGGCGCGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 211015 0.68 0.781721
Target:  5'- uCCAUCCUCuucagcuacgACCaCUGCGCGgccgucccccGCUACCu -3'
miRNA:   3'- uGGUAGGAG----------UGG-GGCGCGC----------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 208659 0.73 0.524111
Target:  5'- cCCGUCUcCGCCCCGgGCGGCgucCCGg -3'
miRNA:   3'- uGGUAGGaGUGGGGCgCGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 205627 0.69 0.736203
Target:  5'- cGCCGUCCUucCugCCCGCGgGGgacGCCGu -3'
miRNA:   3'- -UGGUAGGA--GugGGGCGCgCUga-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 196238 0.67 0.840101
Target:  5'- gACCcuGUCCgccgCGCCCgCGCGCGcCUcucGCCu -3'
miRNA:   3'- -UGG--UAGGa---GUGGG-GCGCGCuGA---UGGu -5'
8956 3' -58.9 NC_002512.2 + 195884 0.67 0.840101
Target:  5'- uCCGUCgUCaggaaggaGCCCUGCGUGGggGCCAa -3'
miRNA:   3'- uGGUAGgAG--------UGGGGCGCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 186824 0.67 0.807625
Target:  5'- gACCGgugCCUCggcgagGCCCUGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUa--GGAG------UGGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 183520 0.74 0.46017
Target:  5'- gGCCGUCCUCGCCUgGCuGCGG--ACCGg -3'
miRNA:   3'- -UGGUAGGAGUGGGgCG-CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 182332 0.67 0.840101
Target:  5'- aGCUcgCCUCccgcguguACUCCGCGCccGGCUGCUg -3'
miRNA:   3'- -UGGuaGGAG--------UGGGGCGCG--CUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 181083 0.66 0.862671
Target:  5'- cGCgAUCCUCuCCCUGUgccGCGACgcCCGc -3'
miRNA:   3'- -UGgUAGGAGuGGGGCG---CGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 180899 0.67 0.80509
Target:  5'- gGCCGUCUUCcaGCUCCGCGUucuccgccacgaucGACU-CCAg -3'
miRNA:   3'- -UGGUAGGAG--UGGGGCGCG--------------CUGAuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.