miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 180424 0.71 0.610641
Target:  5'- gUCGUCCUCggugacggcGCCCCGgGCGGCgcCCGu -3'
miRNA:   3'- uGGUAGGAG---------UGGGGCgCGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 173704 0.69 0.736203
Target:  5'- cGCCGUCCUgggaCugCCCGCGaccgugcuCGGCaACCAc -3'
miRNA:   3'- -UGGUAGGA----GugGGGCGC--------GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 173504 0.66 0.883536
Target:  5'- cUCGaCCUCGCCCCGC-CGuCcGCCGa -3'
miRNA:   3'- uGGUaGGAGUGGGGCGcGCuGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 172553 0.66 0.85533
Target:  5'- gGCCAg-CUCcCCCUGCGUGACguuCCu -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 172260 0.66 0.876092
Target:  5'- uGCUcgCCUCACgCCCGCuCGGucgcccgggacauCUGCCGu -3'
miRNA:   3'- -UGGuaGGAGUG-GGGCGcGCU-------------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 169093 0.66 0.862671
Target:  5'- gGCCcgcGUCCUCGuCCUCGCGgGGCguucgguCCGg -3'
miRNA:   3'- -UGG---UAGGAGU-GGGGCGCgCUGau-----GGU- -5'
8956 3' -58.9 NC_002512.2 + 167700 0.66 0.883536
Target:  5'- aACCuaCCUCACCUgGCG-GuCUACCGg -3'
miRNA:   3'- -UGGuaGGAGUGGGgCGCgCuGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 166654 0.66 0.869822
Target:  5'- gGCCA-CCguguugCGCCCgaGUGCGGgUACCAc -3'
miRNA:   3'- -UGGUaGGa-----GUGGGg-CGCGCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 166072 0.66 0.85533
Target:  5'- cACCGUCgUCcuggacauguACCCCGUGUG-CUccGCCAa -3'
miRNA:   3'- -UGGUAGgAG----------UGGGGCGCGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 163685 0.68 0.763826
Target:  5'- -aCGUCCUCGCCCUGUcCGAaugcgUGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGCGcGCUg----AUGGU- -5'
8956 3' -58.9 NC_002512.2 + 158165 0.66 0.85533
Target:  5'- cACCAUCCagGCCCuCGggaCGCGGCUcguggugcagaACCGc -3'
miRNA:   3'- -UGGUAGGagUGGG-GC---GCGCUGA-----------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 158137 0.7 0.639962
Target:  5'- -gCAUCUUCGgCCUcCGCGACUACCu -3'
miRNA:   3'- ugGUAGGAGUgGGGcGCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 155662 0.66 0.869822
Target:  5'- gGCCGU--UCGCCCCGCGuCGGg-ACCGc -3'
miRNA:   3'- -UGGUAggAGUGGGGCGC-GCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 155330 0.71 0.630185
Target:  5'- cGCCAaCCUCGCuCCCGUcgccGCGGCcGCCu -3'
miRNA:   3'- -UGGUaGGAGUG-GGGCG----CGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 147488 0.67 0.840101
Target:  5'- cACCGg-CUC-CCCCGCGCG-CggaGCCAc -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCuGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 146281 0.68 0.772831
Target:  5'- cGCCguGUCCa-ACCCCG-GCGACUGCUu -3'
miRNA:   3'- -UGG--UAGGagUGGGGCgCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 143210 0.66 0.876779
Target:  5'- uGCCGUCC-C-CCUCGCGCgccguccgcucgGACgcgGCCAc -3'
miRNA:   3'- -UGGUAGGaGuGGGGCGCG------------CUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 140204 0.66 0.890089
Target:  5'- gACCGUacaUCUCGCCCCGC-CGcCUucgcACCGc -3'
miRNA:   3'- -UGGUA---GGAGUGGGGCGcGCuGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 138963 0.67 0.824182
Target:  5'- gGCCGcgCCg-GCCCCGUucGCGGCcGCCAg -3'
miRNA:   3'- -UGGUa-GGagUGGGGCG--CGCUGaUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.