miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 34872 0.72 0.571779
Target:  5'- cGCCGUCgUCGCCgCCGCcGgGACcGCCGu -3'
miRNA:   3'- -UGGUAGgAGUGG-GGCG-CgCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 49524 0.71 0.591155
Target:  5'- -gCAUCggCGCCCUGCGCGACUGgUAc -3'
miRNA:   3'- ugGUAGgaGUGGGGCGCGCUGAUgGU- -5'
8956 3' -58.9 NC_002512.2 + 229819 0.71 0.591155
Target:  5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3'
miRNA:   3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 416 0.71 0.591155
Target:  5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3'
miRNA:   3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 180424 0.71 0.610641
Target:  5'- gUCGUCCUCggugacggcGCCCCGgGCGGCgcCCGu -3'
miRNA:   3'- uGGUAGGAG---------UGGGGCgCGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 77179 0.71 0.620409
Target:  5'- uGCCcgCCgCACCCCGaccggggaCGCGACgagACCGg -3'
miRNA:   3'- -UGGuaGGaGUGGGGC--------GCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 119182 0.71 0.620409
Target:  5'- cGCCAUgcagcuggcCCUgGCCCUGCGgCGGCUGCgCGa -3'
miRNA:   3'- -UGGUA---------GGAgUGGGGCGC-GCUGAUG-GU- -5'
8956 3' -58.9 NC_002512.2 + 126722 0.71 0.620409
Target:  5'- cUCGUCCUCGCCggGCGCGGCgcgUGCCu -3'
miRNA:   3'- uGGUAGGAGUGGggCGCGCUG---AUGGu -5'
8956 3' -58.9 NC_002512.2 + 55533 0.71 0.620409
Target:  5'- gGCCAUCCgCAUCCCggcggacgaggGCGCGGCggACCc -3'
miRNA:   3'- -UGGUAGGaGUGGGG-----------CGCGCUGa-UGGu -5'
8956 3' -58.9 NC_002512.2 + 155330 0.71 0.630185
Target:  5'- cGCCAaCCUCGCuCCCGUcgccGCGGCcGCCu -3'
miRNA:   3'- -UGGUaGGAGUG-GGGCG----CGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 158137 0.7 0.639962
Target:  5'- -gCAUCUUCGgCCUcCGCGACUACCu -3'
miRNA:   3'- ugGUAGGAGUgGGGcGCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 136854 0.7 0.639962
Target:  5'- aGCCGUCC-CGCCuCCGUGUGgaaccacaGCUGCCc -3'
miRNA:   3'- -UGGUAGGaGUGG-GGCGCGC--------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 9951 0.7 0.649734
Target:  5'- uCCAcCCUC-CCCCGCGCgucGACggagACCGa -3'
miRNA:   3'- uGGUaGGAGuGGGGCGCG---CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 112375 0.7 0.659493
Target:  5'- uCCGUCCUCACCgCCgucaGCGCGAac-CCGg -3'
miRNA:   3'- uGGUAGGAGUGG-GG----CGCGCUgauGGU- -5'
8956 3' -58.9 NC_002512.2 + 99179 0.7 0.666313
Target:  5'- cGCCAgucuggUCCUCGCCCUGauccuccagaucucCGCGGCcGCCGc -3'
miRNA:   3'- -UGGU------AGGAGUGGGGC--------------GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 3370 0.7 0.678944
Target:  5'- gACCGUCCgccCGCUCCGCGgGGC--CCAc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGCGCgCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 224911 0.7 0.688621
Target:  5'- cGCCGUCUgCACCuCCGuCGCGGggACCGg -3'
miRNA:   3'- -UGGUAGGaGUGG-GGC-GCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 98265 0.7 0.688621
Target:  5'- cCCGUCCUUGcCCCCGCGCcGCUcguCCc -3'
miRNA:   3'- uGGUAGGAGU-GGGGCGCGcUGAu--GGu -5'
8956 3' -58.9 NC_002512.2 + 109099 0.69 0.698254
Target:  5'- cGCCGUCCcgcCGCCCC-CGCcGACgGCCGc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGcGCG-CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 106738 0.69 0.698254
Target:  5'- cGCC-UCCUCgGCCCCG-GCGGCgcuCCGc -3'
miRNA:   3'- -UGGuAGGAG-UGGGGCgCGCUGau-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.