miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 45338 0.69 0.707837
Target:  5'- gGCCGUCCgccggcccgCGCCgCCGgcugacccCGCGACUGCUg -3'
miRNA:   3'- -UGGUAGGa--------GUGG-GGC--------GCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 3123 0.69 0.707837
Target:  5'- -aCGUCCUCGCCCUcCGCGuCguccgGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGcGCGCuGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 119620 0.69 0.707837
Target:  5'- cGCUcgCCUCccGCCCCaGCGCGGCgcuuuauaaGCCGa -3'
miRNA:   3'- -UGGuaGGAG--UGGGG-CGCGCUGa--------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 81413 0.69 0.707837
Target:  5'- cUCGUCCUCcCCgCCGuCGCGGCU-CCGu -3'
miRNA:   3'- uGGUAGGAGuGG-GGC-GCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 9760 0.69 0.717362
Target:  5'- aGCCGgacCCgcCGCCCCGCGUGGCgGCUc -3'
miRNA:   3'- -UGGUa--GGa-GUGGGGCGCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 70835 0.69 0.717362
Target:  5'- uCCG-CCUCGCCCCGgGaCGAgaUGCCGc -3'
miRNA:   3'- uGGUaGGAGUGGGGCgC-GCUg-AUGGU- -5'
8956 3' -58.9 NC_002512.2 + 111395 0.69 0.72682
Target:  5'- aGCCGUCC-CGCCCCG-GCaGCUcggcGCCGu -3'
miRNA:   3'- -UGGUAGGaGUGGGGCgCGcUGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 114011 0.69 0.72682
Target:  5'- cGCCGUCg--GCCCCGCaGCGGC-ACCGg -3'
miRNA:   3'- -UGGUAGgagUGGGGCG-CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 83008 0.69 0.72682
Target:  5'- cGCCugggCCUCcgggcgguagugGCCCCGCGCGAgCUcgagcacccuggGCCAg -3'
miRNA:   3'- -UGGua--GGAG------------UGGGGCGCGCU-GA------------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 173704 0.69 0.736203
Target:  5'- cGCCGUCCUgggaCugCCCGCGaccgugcuCGGCaACCAc -3'
miRNA:   3'- -UGGUAGGA----GugGGGCGC--------GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 33616 0.69 0.736203
Target:  5'- uGCCGUCCgCGCuUCCGcCGCGACcggugACCGa -3'
miRNA:   3'- -UGGUAGGaGUG-GGGC-GCGCUGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 205627 0.69 0.736203
Target:  5'- cGCCGUCCUucCugCCCGCGgGGgacGCCGu -3'
miRNA:   3'- -UGGUAGGA--GugGGGCGCgCUga-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 72850 0.69 0.736203
Target:  5'- uGCCggGUCCUCGCUCCGgGCcGCgucGCCGu -3'
miRNA:   3'- -UGG--UAGGAGUGGGGCgCGcUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 4855 0.69 0.745504
Target:  5'- gGCCAUCgcggggUUCGCCgCGUGCGGC-GCCGg -3'
miRNA:   3'- -UGGUAG------GAGUGGgGCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 9207 0.69 0.745504
Target:  5'- uCCGUCCcgUCGCCCagcaCGaCGCGGCggGCCAg -3'
miRNA:   3'- uGGUAGG--AGUGGG----GC-GCGCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 224718 0.69 0.745504
Target:  5'- gGCCggCCgcCGCCCCGguCGCGccGCUGCCGu -3'
miRNA:   3'- -UGGuaGGa-GUGGGGC--GCGC--UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 116727 0.69 0.745504
Target:  5'- -gCGUCC-CGCCCgGcCGCGGCgagGCCGg -3'
miRNA:   3'- ugGUAGGaGUGGGgC-GCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 121546 0.68 0.763826
Target:  5'- uCCGUCCgcgCAUgCCGCGcCGACcGCCc -3'
miRNA:   3'- uGGUAGGa--GUGgGGCGC-GCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 121125 0.68 0.763826
Target:  5'- gACCAgCCggaUCGCCCgCGcCGCGcACUGCCu -3'
miRNA:   3'- -UGGUaGG---AGUGGG-GC-GCGC-UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 163685 0.68 0.763826
Target:  5'- -aCGUCCUCGCCCUGUcCGAaugcgUGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGCGcGCUg----AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.