miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 70901 0.73 0.50546
Target:  5'- cGCCG-CCUcCGCCCCGcCGUGGCcGCCGa -3'
miRNA:   3'- -UGGUaGGA-GUGGGGC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 71726 0.67 0.840101
Target:  5'- gACCgAUCCUCccaucaguaccGCUCC-CGCGACUACgGg -3'
miRNA:   3'- -UGG-UAGGAG-----------UGGGGcGCGCUGAUGgU- -5'
8956 3' -58.9 NC_002512.2 + 72850 0.69 0.736203
Target:  5'- uGCCggGUCCUCGCUCCGgGCcGCgucGCCGu -3'
miRNA:   3'- -UGG--UAGGAGUGGGGCgCGcUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 77179 0.71 0.620409
Target:  5'- uGCCcgCCgCACCCCGaccggggaCGCGACgagACCGg -3'
miRNA:   3'- -UGGuaGGaGUGGGGC--------GCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 81413 0.69 0.707837
Target:  5'- cUCGUCCUCcCCgCCGuCGCGGCU-CCGu -3'
miRNA:   3'- uGGUAGGAGuGG-GGC-GCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 82409 0.73 0.4871
Target:  5'- cCCGUCCgcaGCgCCCGCGCGAagACCAg -3'
miRNA:   3'- uGGUAGGag-UG-GGGCGCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 83008 0.69 0.72682
Target:  5'- cGCCugggCCUCcgggcgguagugGCCCCGCGCGAgCUcgagcacccuggGCCAg -3'
miRNA:   3'- -UGGua--GGAG------------UGGGGCGCGCU-GA------------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 86324 0.68 0.799126
Target:  5'- cGCCggCC-CGCCCgcggggagaCGCGCGGCcGCCGa -3'
miRNA:   3'- -UGGuaGGaGUGGG---------GCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 87965 0.67 0.847042
Target:  5'- uUUAUUCUCACCCCGUcggggccGCGGCgccCCGa -3'
miRNA:   3'- uGGUAGGAGUGGGGCG-------CGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 91773 0.67 0.832224
Target:  5'- uCCGcCUUCACCCCcagggccagcGUGCGGCUGCg- -3'
miRNA:   3'- uGGUaGGAGUGGGG----------CGCGCUGAUGgu -5'
8956 3' -58.9 NC_002512.2 + 94073 0.77 0.317559
Target:  5'- gACCcUCCUCcCCCCGCGaCGGCggcgGCCGg -3'
miRNA:   3'- -UGGuAGGAGuGGGGCGC-GCUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 94371 0.67 0.832224
Target:  5'- gGCCAUCCUCAggaCGUGCGug-GCCAu -3'
miRNA:   3'- -UGGUAGGAGUgggGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 94548 0.72 0.543019
Target:  5'- gGCCAgcagCACCCCgGCGCGGCUgacGCCGa -3'
miRNA:   3'- -UGGUaggaGUGGGG-CGCGCUGA---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 95604 0.75 0.408813
Target:  5'- gACgAUCCUCcgggACCCCGCGCgGACgacgaagGCCAg -3'
miRNA:   3'- -UGgUAGGAG----UGGGGCGCG-CUGa------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 96486 0.67 0.840101
Target:  5'- gGCCGU-CUCGCCcuccaugguCCGgGCGACcGCCGg -3'
miRNA:   3'- -UGGUAgGAGUGG---------GGCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 98265 0.7 0.688621
Target:  5'- cCCGUCCUUGcCCCCGCGCcGCUcguCCc -3'
miRNA:   3'- uGGUAGGAGU-GGGGCGCGcUGAu--GGu -5'
8956 3' -58.9 NC_002512.2 + 98847 0.75 0.408813
Target:  5'- cGCCGUCCUC-CCCCGCGgcccCGAC-GCCc -3'
miRNA:   3'- -UGGUAGGAGuGGGGCGC----GCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 99179 0.7 0.666313
Target:  5'- cGCCAgucuggUCCUCGCCCUGauccuccagaucucCGCGGCcGCCGc -3'
miRNA:   3'- -UGGU------AGGAGUGGGGC--------------GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 99741 0.68 0.772831
Target:  5'- cGCCG-CCggGCCCCGCggccGCGAC-ACCAc -3'
miRNA:   3'- -UGGUaGGagUGGGGCG----CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 100032 0.72 0.542068
Target:  5'- cGCCGUCCUcCGCCuCCGCcuccgccuccaucGCGACggggGCCGc -3'
miRNA:   3'- -UGGUAGGA-GUGG-GGCG-------------CGCUGa---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.