miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 27742 0.74 0.425537
Target:  5'- gACCA-CC-CGCCCCGCGgCGGCgGCCGa -3'
miRNA:   3'- -UGGUaGGaGUGGGGCGC-GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 28021 0.72 0.571779
Target:  5'- cGCCGUCCUCggaccgcagGCCCCaG-GCGAgCUGCCGg -3'
miRNA:   3'- -UGGUAGGAG---------UGGGG-CgCGCU-GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 28159 0.74 0.469061
Target:  5'- aGCCGUCgUCuccCCCCGCGaCGACgacGCCGc -3'
miRNA:   3'- -UGGUAGgAGu--GGGGCGC-GCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 33616 0.69 0.736203
Target:  5'- uGCCGUCCgCGCuUCCGcCGCGACcggugACCGa -3'
miRNA:   3'- -UGGUAGGaGUG-GGGC-GCGCUGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 34872 0.72 0.571779
Target:  5'- cGCCGUCgUCGCCgCCGCcGgGACcGCCGu -3'
miRNA:   3'- -UGGUAGgAGUGG-GGCG-CgCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 37066 0.67 0.832224
Target:  5'- uCCA-CCUgGCCCCgGUGCGAUcGCCc -3'
miRNA:   3'- uGGUaGGAgUGGGG-CGCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 39355 0.67 0.82092
Target:  5'- aGCCGgucCCUCGCCCCGaccagcucgucgaGgGAgUGCCGg -3'
miRNA:   3'- -UGGUa--GGAGUGGGGCg------------CgCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 39997 0.75 0.417124
Target:  5'- cGCCGUCCUCGCCgCCGC-CGuCUccGCCGu -3'
miRNA:   3'- -UGGUAGGAGUGG-GGCGcGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 43170 0.67 0.832224
Target:  5'- gGCCGacUCCUCGCccaaCCCGCcGCaGACgaagGCCGa -3'
miRNA:   3'- -UGGU--AGGAGUG----GGGCG-CG-CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 43653 0.67 0.840101
Target:  5'- gACCGggaCCUCGCCCuCG-GUGGCgGCCGc -3'
miRNA:   3'- -UGGUa--GGAGUGGG-GCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 45338 0.69 0.707837
Target:  5'- gGCCGUCCgccggcccgCGCCgCCGgcugacccCGCGACUGCUg -3'
miRNA:   3'- -UGGUAGGa--------GUGG-GGC--------GCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 46030 0.68 0.799126
Target:  5'- cGCUgaAUCCUUugCUCGCGCGACguuCUu -3'
miRNA:   3'- -UGG--UAGGAGugGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 48476 0.66 0.883536
Target:  5'- gGCCAUCCUgaacgCGuCCCCG-GCGGagGCCAg -3'
miRNA:   3'- -UGGUAGGA-----GU-GGGGCgCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 49524 0.71 0.591155
Target:  5'- -gCAUCggCGCCCUGCGCGACUGgUAc -3'
miRNA:   3'- ugGUAGgaGUGGGGCGCGCUGAUgGU- -5'
8956 3' -58.9 NC_002512.2 + 50581 0.66 0.85533
Target:  5'- uGCCcgCCUCGCcgCCCGCG-GACUGg-- -3'
miRNA:   3'- -UGGuaGGAGUG--GGGCGCgCUGAUggu -5'
8956 3' -58.9 NC_002512.2 + 53354 0.68 0.781721
Target:  5'- gACCAcCCUC-CCCUaCGUGACgGCCAa -3'
miRNA:   3'- -UGGUaGGAGuGGGGcGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 55533 0.71 0.620409
Target:  5'- gGCCAUCCgCAUCCCggcggacgaggGCGCGGCggACCc -3'
miRNA:   3'- -UGGUAGGaGUGGGG-----------CGCGCUGa-UGGu -5'
8956 3' -58.9 NC_002512.2 + 62143 0.76 0.36885
Target:  5'- cGCCGacgcccggcagcUCCUCGCCCCGCuCGACgagagACCGg -3'
miRNA:   3'- -UGGU------------AGGAGUGGGGCGcGCUGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 68954 0.67 0.832224
Target:  5'- gACCccCC-CACCgCCGCaGCGACUGuCCGc -3'
miRNA:   3'- -UGGuaGGaGUGG-GGCG-CGCUGAU-GGU- -5'
8956 3' -58.9 NC_002512.2 + 70835 0.69 0.717362
Target:  5'- uCCG-CCUCGCCCCGgGaCGAgaUGCCGc -3'
miRNA:   3'- uGGUaGGAGUGGGGCgC-GCUg-AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.